BAC Information

Click to search

BAC

Clone NameMSMg01-076N07
Chromosome15 (Build37)
Map Location 42,333,418 - 42,333,699
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N07.T7 (MSMg01no076_n07.b1)MSMg01-076N07.TJ (MSMg01no076_n07.g1)
ACCAG299314AG299315
length697795
length of high quality
(start - end)
282 (74 - 355)164 (144 - 307)
definitionCHROMAT_FILE: MSMg01no076_n07.b1 PHD_FILE: MSMg01no076_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:57 2005CHROMAT_FILE: MSMg01no076_n07.g1 PHD_FILE: MSMg01no076_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATCCGCGG
AATTCTGTTGTGTGCCACAATTAGAAAGGGAGAGCTTTATGTGAAAGTTT
CAAGATGTATCCCATGGTCTTAACTATTTCCAATAAGATACAATGTAGAA
AAGGACAGTGTGGGCAGTGCAGACAAATCAAACCCAGTGTCCAAATTACA
CACACTCTTTCCTGAGCTTTCAGTGAAGTGCAGGACCTAGATTAGTTTGT
TTATTTTATTCTTCATTAAAGTGCACCTCTGCCTCAAACTGGAAGTTAAG
TGCCAAAATCCTATGCATGTCTCTTCTCAAAGTTCTCCCAGGAAGATGGG
AAACAGGAAGCACGGTAAGTCCTGTGAGAAACTCTGTTTTGGAATTTGCA
ATTTGTATAGATTGACTGCACGGTTGGTAAACTATTGCTCCATGTAACAG
TAACGTCCAAAGAGGTATCGCAAGAGAAATGGCTGATTCTATCCAAATCT
TCCAAAAACTCGACAGCGAAGCTCCCTTTCTGTATAATCAACTCTGACAG
AAAATTCCATGTACTGATGTCTGGAGACCGCCTACTCATGTTTTGTCATG
AGATTAAACTTCTGCTAAAACTTTTGAATGCTATTATCCGGGAAATTTAA
TTCATGCCTGTCCGACTTTACAATCTAACGTTCTATGACTGTCCTTT
NNNNNNNNNNNNNNNNNNNTTTTNCCCCTCCTTTNTTTCTCCCTTCTCTC
CCCTTTTCCCTTCCCCTATGCTGTGAGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCC
ACAGTGGTATGATAAGGTACAAGGCATTACTTCAATTTTCTTGTATCTGT
TGAGGCTTGTTTTGCGACTGACTATATGGTCAATTTTGAAGAAGGATCCA
TGAGGTGCTAAGAATCTACATTTTTTTGCCTGAATTATTCTATAGATGTT
TGCTAGGTCCATTTGATTCATAATGCCTGTTAGTTTCATCTACTTTCCTG
CTTACTTTCTTGTCTCAACACCCTGTAACTTACTGACAGTGTCTTATTGA
AGTCTCCCCACTATTAATATGCGGCGCCCTCCGTCCGATTTGTTCTTCAC
TCATGCCTTTTCTACTACCGTTATTACCCTTGTGTCTCGCTCTTATACTT
CTACCTTTGTTATCCCACCCCATCATACTCTTTCTCCTTATGTATACTGA
TAACCCCTTTTCTCGCCCCTCTTTCACTTATTTTTTTATTATCACTTATC
CTTCTTACCTCTTCTTTTCGCCATTACCCCCCCTCTGCTCCCCGTTCCCC
GAATACCTATTCCTCCTTCCTTTCCCACCTTTCTTACTTCTCCCTTTATT
CCCCCTCTTACACACTACTTCACCTTTCCTACTCTCTTTTCCCCTTATTC
CCACCACCCTCCAATTTACAATCCTTACAAAACTACTCATCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n07.b1 MSMg01no076_n07.b1 CHROMAT_FILE:
MSMg01no076_n07.b1 PHD_FILE: MSMg01no076_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:57 2005
         (282 letters)



>mm_chr15_42333218_42333899
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagggagagctttatgtgaaagtttcaagatgtatcccatggtcttaactatttccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 482 gaaagggagagctttatgtgaaagtttcaagatgtatcccatggtcttaagtatttccaa 423

                                                                       
Query: 61  taagatacaatgtagaaaaggacagtgtgggcagtgcagacaaatcaaacccagtgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taagatacaatgtagaaaaggacagtgtgggcagtgcagacaaatcaaacccagtgtcca 363

                                                                       
Query: 121 aattacacacactctttcctgagctttcagtgaagtgcaggacctagattagtttgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aattacacacactctttcctgagctttcagtgaagtgcaggacctagattagtttgttta 303

                                                                       
Query: 181 ttttattcttcattaaagtgcacctctgcctcaaactggaagttaagtgccaaaatccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttttattcttcattaaagtgcacctctgcctcaaactggaagttaagtgccaaaatccta 243

                                                     
Query: 241 tgcatgtctcttctcaaagttctcccaggaagatgggaaaca 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgcatgtctcttctcaaagttctcccaggaagatgggaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)