BAC Information

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BAC

Clone NameMSMg01-076P23
Chromosome15 (Build37)
Map Location 92,799,985 - 92,800,139
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076P23.T7 (MSMg01no076_p23.b1)MSMg01-076P23.TJ (MSMg01no076_p23.g1)
ACCAG299438
length699836
length of high quality
(start - end)
---155 (134 - 288)
definitionCHROMAT_FILE: MSMg01no076_p23.b1 PHD_FILE: MSMg01no076_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:10 2005CHROMAT_FILE: MSMg01no076_p23.g1 PHD_FILE: MSMg01no076_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAATTTGCGCCGCTAAACGACTCCTATATTCAGAGGATCCGCGGAATT
CTGTGTCCTCACACAGATTGTCTGTACATAATATAGAACGTTCCTTGAAA
AGCATCTTGTTCTTACTGCACTGTGTGTATTTATGTGTAGCCGGTTGTGA
GCATGGTGTCGTGTGTATATAGTGTGAGCCTGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
NTTTTTTTTCTTNNNNNNTTTTTCTTTNCTTTTATCTCCCTCTCCTCCCC
CTCCCCTCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTTTCGGTCAGCA
ACCTGCACCCTGAAAGAGTCGCACCCTAAAACCTCTTCATTCTCTTCTGT
GCCTATGGTGATGTGCAACGGATTAAGATTCTGTTCAAGATGCCCCAGTG
TAGGGGAATCAAAGGTGGGGAGGTAGGAGTGGATGGGTGGCTCGTTTTCC
CTCCTCTCTCCTCTTCTCTTTCCCGCCCTCCCTTCCCCTCTCCTCTTCCT
TTTTTTCCCTTTTTCCCCCCCTTTTCCTCCCTCCTCCTTTCTTTCTTTCC
CGTTCCCTCCCTTTTTTCCCCGCTCCTTCCTTCCTCTTTTTTTTTCTCTC
TCCTCCCTCTTTCCTCTTTCCTATCTTTCCCCTCTTTACTCCATGCTTTT
TGTTCTTTCATTTTTCCTCCCTACCCTTTACATCCCTCTTCTCCATTATT
TTCCTCTATTCCTCCTTTTCCCCCCCCATCTTACTCCATGTCCCTCTTTT
AATCCCTTTTTCCTCATAACCTACTTTCATTATCCCTTTATTCACTCTCC
TTTTTTCCCACTCTCCTACTAAACTCGCTTCTCATCTTTCCTTTTCCCTC
CCTTTCCGACCTTTCATCTCATTATTCCGCACTTCAATACCATCCTCCAT
CAACTGTTTATTAAATCCTATATTACCCAAATTCTCACACCCACCCACCT
TTATTATAATTATTTCTCATATTCCCCTCCCATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_p23.g1 MSMg01no076_p23.g1 CHROMAT_FILE:
MSMg01no076_p23.g1 PHD_FILE: MSMg01no076_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:11 2005
         (155 letters)



>mm_chr15_92799785_92800339
          Length = 555

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcctttcggtcagcaacctgcaccctgaaagagtcgcaccctaaaacctcttcattct 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccttttggtcagcaacctgcaccctgaaagagtcgcaccctaaaacctcttcattct 260

                                                                       
Query: 61  cttctgtgcctatggtgatgtgcaacggattaagattctgttcaagatgccccagtgtag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 261 cttctgtgcctatggtgatgtgcaacgggttaagattctgttcaagatgccccagtgtaa 320

                                              
Query: 121 gggaatcaaaggtggggaggtaggagtggatgggt 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaatcaaaggtggggaggtaggagtggatgggt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)