BAC Information

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BAC

Clone NameMSMg01-078B06
Chromosome15 (Build37)
Map Location 79,111,608 - 79,111,914
singlet/doubletsinglet
Overlap geneBaiap2l2
Upstream geneCsf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8
Downstream genePla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B06.T7 (MSMg01no078_b06.b1)MSMg01-078B06.TJ (MSMg01no078_b06.g1)
ACCAG299499AG299500
length678676
length of high quality
(start - end)
310 (70 - 379)78 (72 - 149)
definitionCHROMAT_FILE: MSMg01no078_b06.b1 PHD_FILE: MSMg01no078_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:17 2005CHROMAT_FILE: MSMg01no078_b06.g1 PHD_FILE: MSMg01no078_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGCATCACGAATAGTAGCCGGGAGCCTGGAGGCCCTGCAGGGTGAA
GAGATGGGTGTGGCCTGATGTGAAGGGCCCTTGGAAATTTTGACTGACAG
TTCCTGCTTTCCAACTTATAAGGGGCTCTCTTCCAACTTATTAGGGTGCT
CTCTTTGACACAGAGACTGGTTTTTCCGATAGAAATATATATGGTCCTAT
ACACGACAGTCGTACTAGCACTGCTGGTACCAGGACTTCACAAACACTTG
GCCCAGTACCATTTTTCCAGCACCTGCTTGGACTTGGATGTTGGTTATAG
AACTTGGCTCTCTGTGCTCCTGTGTTCACCTGGGCTGGGCAGGGACTAAT
GTCACCCAGGCCCACTCTGTAATGAGAGATGTGTCTCCAGCTACCAACAT
CTTGGCTGTGACAACTACACTTGGCCCCCATCTAGAGCCTTGCCATGTAT
AACAGGACCATGGCCTCTCCCTAAAATTCTTCTGTCCAAACTGACACCTG
TTGGTAAACAGACTTAATACATTTGTTAACTTATCGAAACTTCACCCTCT
CCCTAGAGGCGTCCTTTTACCTATCAAACGCCCTACTGATCACTTGTTCC
CTCCTCTAAATTTATTTTTCTGCCCTTC
NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCGCGCACTTCCCAGGGAAGCCGCCAAGCCATGAAGCTT
CAAGGAAGATTTCGTCTTTTAAGTTTCTGTTTTTANTTCTTATGTGTACG
GAAGAGCTCTGCACTATAATGGATTGCTATACCTGGTGTTGTGGTGTTCT
GGGTACACCCCATTAGGGGGGGGCTCCTGGAATAAACCTCTCTTTTGTTG
TTTTCTTATTTTTTAATACCAACCCTATCTCTTTTATTCCTCTTTCTCAG
CTACTCTCCTCCTTTCTCTTTTATATATTTTCCCCTCTGTTTTTCTCTAT
ATATTAATAAACGTTCTTCTTTTTTCTTCTTCTCTGTCTACGAGCTGCGT
GCTTCTCACTCTTGTCTTAATACTTCTACTTCTTTTTTTCTTTCTTTACA
CCTCCTTCTTTGTCTCTCCCCGTCACCCTCCCCCGGTACTATCATCTACC
TCTTCTTGTTTCTCCCTCCCCATAACTACTATTATTTCTTCCCTTCCTAT
TTCTCACAATTTTTCCTAACCTTTCCCTCTACTCTTCCATTACTTCGCAT
TCTTCTCTCACTCCATCTTTGTCTCCTCTACCATTTCTTCCTCCTTACCT
ATCCTCCCCTTTATTTACTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b06.b1 MSMg01no078_b06.b1 CHROMAT_FILE:
MSMg01no078_b06.b1 PHD_FILE: MSMg01no078_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:17 2005
         (310 letters)



>mm_chr15_79111404_79112114
          Length = 711

 Score =  542 bits (280), Expect = e-158
 Identities = 300/312 (96%), Gaps = 11/312 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gggagcctggaggccctgcagggtgaagagatgggtgtggcctgat-gtgaagggccctt 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 511 gggagcctggaggccctgcagggtgaagagatgggtgtggcctgatggtgaagggccctt 452

                                                                       
Query: 64  ggaaattttgactgacagttcctgctttccaacttataaggggctctcttccaacttatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggaaattttgactgacagttcctgctttccaacttataaggggctctcttccaacttatt 392

                                                                       
Query: 124 agggtgctctctttgacacagagactggtttttccgatagaaatatatatggtcctatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agggtgctctctttgacacagagactggtttttccgatagaaatatatatggtcctatac 332

                                                                       
Query: 184 acgacagtcgtactagcactgctggtaccaggacttcacaaacacttggcccagtacca- 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 331 acgacagtcgtactagcactgctggtaccaggacttcacaaacacttggcccagtaccaa 272

                                                                       
Query: 243 ----tttttccagcacctgcttggacttggatgttggttatagaacttggctctctgtgc 298
                    ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 271 gccc-----ccagcacctgcttggacttggttgttggttatagaacttggctctctgtgc 217

                       
Query: 299 tcctgtgttcac 310
           ||||||||||||
Sbjct: 216 tcctgtgttcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 711
Length adjustment: 9
Effective length of query: 301
Effective length of database: 702
Effective search space:   211302
Effective search space used:   211302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)