BAC Information

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BAC

Clone NameMSMg01-078J03
Chromosome15 (Build37)
Map Location 4,046,622 - 4,047,097
singlet/doubletsinglet
Overlap geneOxct1
Upstream geneLOC666163, EG666167, Sepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196
Downstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078J03.T7 (MSMg01no078_j03.b1)MSMg01-078J03.TJ (MSMg01no078_j03.g1)
ACCAG299874AG299875
length939676
length of high quality
(start - end)		---476 (76 - 551)
definitionCHROMAT_FILE: MSMg01no078_j03.b1 PHD_FILE: MSMg01no078_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:56 2005CHROMAT_FILE: MSMg01no078_j03.g1 PHD_FILE: MSMg01no078_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATAAAATTTTTNNTNTTGNNNAAAAAAAATAAAAATATTTAAAAA
TAGAAATGATGATAAATCATTNNNANAATCGCATGGGATGTAAGACTATT
ATTCCNCCGAGTCACATCCTATTTACTCATGCGTTTTAACTAATAGTAAC
ACGCTGAGTTTTTTTATTTTAAACCACGAAGATCCCAATATACATAATAT
ATCAAAAGNCTCCATATTTTCTCTCGCCCCTCTCCNATCTCCACTTTCCT
TTTTATACCCTCACCATATTAAACTCATACTGGGACAATAGAGAACTATA
TAACCCCTTCCCGCACGTTTATATTACCTTAGTCTTCATTATTTTATTTG
GTTGGCTCCTTCTTGTACTTCAAGAAGATTCCGTTCGCGCTCACGACGTA
TAATTCCAAAACACATCCACTATCCCCTTTCCTCTCCTGTTTTTTTAACA
TTTTCTAACATGTAACAATTCTACATCGATACTACCCACAGATTCCACCG
CGTCTTACACCGATTCCTTTGCCCGCTTCTTCGTGTCCCCCCCCCGCTTT
GTATCGTCACTCAGTCTAGATATGAGCTTTATATGTATCCTATGTTCTAA
TTATTCTCAATTCACCACTATGTCCTCTTTCATGTGTTTTCTTATCACCG
CGCATCCTGTCCGCTCTCTTTCCCATTTCTCTTTTCCTTCTCGACCTAAC
ATTCATTCCCAAGAACCAATTTTATTCTCTTTATGATATCGATATTTCTA
GGAACACACTAATAACGATAATAAGTTTATATCACATTTTTTTCTTATAA
TCTACGTCCTATTTTCATTTGTTTATATCCTGTTCCCTTCTTATATTTCT
ATCTCGTTCTTATTTCTCTTTTTCCGATGATCGTTCGCTTTAGTCCACTG
GCAGATACGAATATCACACCACTTCTATACCTATACATN

CCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTTATTTATAACAAAGGAGCAAA
ATGACCCTTCTAGTGTTTGAGGTCACTCTCATCCAGTCTCAGCTATGATA
AAGGAGGAAATGTAAGTGCCCTTGCAATGGCAGCCCTTACATGGTGTTAT
TGACATGAGAGTTCAGAGATAGGCAATTTCCAAGCTTTTGGACAGTATGA
AGGAAACTCAGATACGATAAGGATTTCCTACAGAGACTTATTCTCCTATA
TTCTTAAAGGGTAGTGGCAGAAAAGAAGCCACCCAACAGAAAGTGTGACA
TTGGGTTAAAAATGACCACCAAATTACAGTGACCTTGGTGGACTGAAGAT
ATCCTCTGAGTCTCCTGCTTGGGCCCTCATTGGCCAACCCCAAGTGGAAA
TGTGTCAGGCTTTTGTGGATGGAGAAAGTGGGAGTGGATATACAGTACTA
GGCTGGTGCACTGGAGTTTTGATTGTTGAAAGTGTGTACCATTCTGTACT
GTAGGCCTTATTAGCGTGAGAGGGTCCTCTGCTAATAGGGTTGCCTAAGT
CTGTACCAGGTCACTGAGTTCATGCCGAGGCTGTGACCTGAAGACCAGTA
GAGTCTCTTTGAATTGCGGACTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_j03.g1 MSMg01no078_j03.g1 CHROMAT_FILE:
MSMg01no078_j03.g1 PHD_FILE: MSMg01no078_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
         (476 letters)



>mm_chr15_4046422_4047297
          Length = 876

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttatttataacaaaggagcaaaatgacccttctagtgtttgaggtcactctcatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttatttataacaaaggagcaaaatgacccttctagtgtttgaggtcactctcatcca 260

                                                                       
Query: 61  gtctcagctatgataaaggaggaaatgtaagtgcccttgcaatggcagcccttacatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcagctatgataaaggaggaaatgtaagtgcccttgcaatggcagcccttacatggt 320

                                                                       
Query: 121 gttattgacatgagagttcagagataggcaatttccaagcttttggacagtatgaaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttattgacatgagagttcagagataggcaatttccaagcttttggacagtatgaaggaa 380

                                                                       
Query: 181 actcagatacgataaggatttcctacagagacttattctcctatattcttaaagggtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcagatacgataaggatttcctacagagacttattctcctatattcttaaagggtagt 440

                                                                       
Query: 241 ggcagaaaagaagccacccaacagaaagtgtgacattgggttaaaaatgaccaccaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagaaaagaagccacccaacagaaagtgtgacattgggttaaaaatgaccaccaaatt 500

                                                                       
Query: 301 acagtgaccttggtggactgaagatatcctctgagtctcctgcttgggccctcattggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtgaccttggtggactgaagatatcctctgagtctcctgcttgggccctcattggcc 560

                                                                       
Query: 361 aaccccaagtggaaatgtgtcaggcttttgtggatggagaaagtgggagtggatatacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 aaccccaagtggaaatgtgtcaggcttttgtggatggagaaagtgggagtggatacacag 620

                                                                   
Query: 421 tactaggctggtgcactggagttttgattgttgaaagtgtgtaccattctgtactg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactaggctggtgcactggagttttgattgttgaaagtgtgtaccattctgtactg 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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