BAC Information

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BAC

Clone NameMSMg01-078K22
Chromosome15 (Build37)
Map Location 51,024,835 - 51,025,070
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K22.T7 (MSMg01no078_k22.b1)MSMg01-078K22.TJ (MSMg01no078_k22.g1)
ACCAG299960
length702700
length of high quality
(start - end)
---248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no078_k22.b1 PHD_FILE: MSMg01no078_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:05 2005CHROMAT_FILE: MSMg01no078_k22.g1 PHD_FILE: MSMg01no078_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAAAACACTTTACCAAAAAAAAAAAAAAAAAAAAA
AAAAAGCTTTACCTCTACATAGGACAGATTTGTCAAGAAAGGCAACAGCC
ATGAATAATACATGTACACAGTGTTCTTAAAGGCCAGAAGAGTTCAGAAT
GAGACTTTAAAACATGCAAAGAAATCTACATTTCAAATGAAAACCTCAGT
CTGTTGAACTGAATAAAGTGGCTCGCTTGGAAAACATGGTAGATCCAGCA
AGATCCCCCTAGACTCTCACCTGAATTANTTATCCCCTCTAACTACTCTC
CTGCTTTTCTTTGATAGCCACACATACAGCTGGGTTTATTGTCACGTTGG
GCCTGAGTTGAACCAGGAAATTGGGGGTTGAAACGGTCCTAGCTGTTTGC
TACCTTTTCAAACAAAACCTTTGAAACATCCTTCCTTTCTGGCTCTCTGC
TTACATACCTATTCCAGGCCAGCAGAACTGCTGGCTCATTTCTCTAATTC
ACATTATAGCACTCTAAACAATTCCTCAGCCTTCCTGCTTGCCCTTAGAG
TGATCTCCAGATTATTTACTCTGACTCTGTTTTCTCATCATGCCTGATAG
GACATACTTTTTTTGAACCTTACTCCCATTACCCTGTCCAGTGTGTAGTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k22.g1 MSMg01no078_k22.g1 CHROMAT_FILE:
MSMg01no078_k22.g1 PHD_FILE: MSMg01no078_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:05 2005
         (248 letters)



>mm_chr15_51024623_51025270
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  aaaaaaaaaaaaaaaaaaagctttacctctacataggacagatttgtcaagaaaggcaac 72
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 213 aaaaaaaaaaaaaaaaaaagctttacctctacataggaaagatttgtcaagaaaggcaac 272

                                                                       
Query: 73  agccatgaataatacatgtacacagtgttcttaaaggccagaagagttcagaatgagact 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agccatgaataatacatgtacacagtgttcttaaaggccagaagagttcagaatgagact 332

                                                                       
Query: 133 ttaaaacatgcaaagaaatctacatttcaaatgaaaacctcagtctgttgaactgaataa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttaaaacatgcaaagaaatctacatttcaaatgaaaacctcagtctgttgaactgaataa 392

                                                                   
Query: 193 agtggctcgcttggaaaacatggtagatccagcaagatccccctagactctcacct 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agtggctcgcttggaaaacatggtagatccagcaagatccccctagactctcacct 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)