BAC Information

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BAC

Clone NameMSMg01-079G16
Chromosome15 (Build37)
Map Location 55,199,866 - 55,200,181
singlet/doubletsinglet
Overlap geneCol14a1
Upstream geneColec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
Downstream geneMrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079G16.T7 (MSMg01no079_g16.b1)MSMg01-079G16.TJ (MSMg01no079_g16.g1)
ACCAG300501AG300502
length696703
length of high quality
(start - end)
327 (311 - 637)520 (70 - 589)
definitionCHROMAT_FILE: MSMg01no079_g16.b1 PHD_FILE: MSMg01no079_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:02 2005CHROMAT_FILE: MSMg01no079_g16.g1 PHD_FILE: MSMg01no079_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGATCACATCCAAAGAGGACCGCGGATTCAGAGA
TCCACTGCCTCTGTTAACACAGACAGCAAGCTAGTTGAGTAGGCCTCATC
CTGAAATCACCATTTCTACCTCACTTGGATCTAAATTAGTTCTGTCTCAG
GCTGACCTTGAACTCAGGAATCTGTCTGCCCGGGTAAATACAAACAAGAT
GATGTGCTGCAATTATCATTCCCTAAATCTCTTTATCTCCTTCCTTAGTA
TCTTTCCAACAAGTTGTCTCATAGTTAGCTGCCTTTATTCTTTTAGAATC
AGGATTTTTCTCATAAAATTCATATTGCATATTTTTTGCATATTTTTGAG
GAATTATATATTTTGAACTCATGTTTTAAAGAGTTCTTTTCCACCCCCTT
AAGGGCTGTCCTGAAGGACCCCAGGGCTTTCCATTTTGCTGAGACATTAG
CCACACCTTAACCTCCTGGATTTGTGCTATTTCTGACTCTCATGGAGTCA
TTAATATTAACAGGGAGAACATTCCTCGAAGGAGGAATGTAAAATGTGTA
CATTATTATACAAACAAGCCTTATGTCCTTGGCAGCCATTGACATTCGTG
GAGACCCCTGTCATGTCTGTTGGCCCTGTTCCAGGGTCAGGTACCATGTC
ACTCTGTCCCCATGAAGACCATGCTGGACCCAGCAGCCTCTTCTCT
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAAAGCCTGTCTTTAGAAAAAAAAGTTCT
CTCTCTGCTGCCTGCTGATCAAGATGTAGAGCTCTGAGCTCCTTCTCCAG
CACTATGTCTGCCGGCATGTCACCATGCTTCCCACCAGGATGACAATGGA
CTAAACTTCTGAACCTGTAAGCCAGCCCCAACTACATGTTTTCCTTTGTA
AGAAACAGAAAGAAATAAGTCCTAAGAAGTGACTAATCATCAACCTACTC
TAATATATAAAATAAGAATAAATTTACTGTACAAACAAGGAGTCTTTTTA
AGATCTTTCTCTAAGAATCAGAACCATATCAGCACACATAGAGACGACAC
CCTAATGGGTCTATCAGTAGTTCTCAACCCTGAGAAAATGTTTTCAAAAA
ACAGAGTCTCACAAGTAGCCCTGGCTGGCACAGAACTCTCTACATGGACC
ATACTGGTATCAAACTTACAGAGCTCTGCCCATCTTTACCTCCCAAGTGC
TGCAATTAAAGGCATACATCACTATATCTGGCCTGATCTGGGTGTTTTTA
AAGCAAGGCTTACAAGACACCGTCTCCCTAGTTACTTTAATTTAGCATGT
GTGGCGGTTTGAATAAAATGACCCCCCTAGGCCCATTATGGAGTGGGAAT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_g16.g1 MSMg01no079_g16.g1 CHROMAT_FILE:
MSMg01no079_g16.g1 PHD_FILE: MSMg01no079_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:02 2005
         (520 letters)



>mm_chr15_55199613_55200532
          Length = 920

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 205 aagaagtgactaatcatcaacctactctaatatataaaataagaataaatttactgtaca 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaagtgactaatcatcaacctactctaatatataaaataagaataaatttactgtaca 510

                                                                       
Query: 265 aacaaggagtctttttaagatctttctctaagaatcagaaccatatcagcacacatagag 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aacaaggagtctttttaagatctttctctaagaatcagaaccatatcagcacacatagag 450

                                                                       
Query: 325 acgacaccctaatgggtctatcagtagttctcaaccctgagaaaatgttttcaaaaaaca 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acgacaccctaatgggtctatcagtagttctcaaccctgagaaaatgttttcaaaaaaca 390

                                                                       
Query: 385 gagtctcacaagtagccctggctggcacagaactctctacatggaccatactggtatcaa 444
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 389 gagtctcacaagtagccctggctggcacagaactctctacatggaccatactgccaacaa 330

                                                                       
Query: 445 acttacagagctctgcccatctttacctcccaagtgctgcaattaaaggcatacatcact 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acttacagagctctgcccatctttacctcccaagtgctgcaattaaaggcatacatcact 270

                           
Query: 505 atatctggcctgatct 520
           ||||||||||||||||
Sbjct: 269 atatctggcctgatct 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)