Query= MSMg01no079_o06.b1 MSMg01no079_o06.b1 CHROMAT_FILE:
MSMg01no079_o06.b1 PHD_FILE: MSMg01no079_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:38 2005
(275 letters)
>mm_chr15_59842014_59842689
Length = 676
Score = 480 bits (248), Expect = e-140
Identities = 268/278 (96%), Gaps = 7/278 (2%)
Strand = Plus / Minus
Query: 4 ggaattctctgactctgtgcatggttaaatgtgcatctgaaaattgtgattatctctgaa 63
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 459 ggaattatctgactctgtgcatggttaaatgtgcatctgaaaattgtgattatctctgga 400
Query: 64 gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 340
Query: 124 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcag-attgttgtttttt 182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 339 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcagaattgttgtttttt 280
Query: 183 aaatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 220
Query: 243 ttgttgttgttgtt------gtcctgagaaggttttgg 274
|||||||||||||| ||||||||||||||||||
Sbjct: 219 ttgttgttgttgttgttgtcgtcctgagaaggttttgg 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space: 177422
Effective search space used: 177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no079_o06.g1 MSMg01no079_o06.g1 CHROMAT_FILE:
MSMg01no079_o06.g1 PHD_FILE: MSMg01no079_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:38 2005
(567 letters)
>mm_chr15_59697977_59698947
Length = 971
Score = 955 bits (494), Expect = 0.0
Identities = 549/578 (94%), Gaps = 20/578 (3%)
Strand = Plus / Plus
Query: 1 agttgccccattagggttcttgtagccat-------aggtcctgcatccttagagtgtcc 53
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 194 agttgccccattagggttcttgtagccataggtcaaaggtcctgcatccttagagtgtcc 253
Query: 54 tcactgaggagc----aaagaagcagcatgcctgctcttgtgtcacctccacacgtggaa 109
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 254 tcactgaggagcaaataaagaagcagcatgcctgctcttgtgtcacctccacatgtggaa 313
Query: 110 tcagtgacacgtctcatttgccagaaccatcgccttctctccctgctgcgggagaccttt 169
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 314 tcagtgacacatctcatttgccagaaccatcgccttctctccttgctgcaggagaccttt 373
Query: 170 gatattttctcactttctatcgacagttcctcacccgacagtctgtctcctcacccgtta 229
|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 374 gatattttctcactttctatcgccagtt-----ccc----gtctgtctcctcacccgtta 424
Query: 230 ccagtgacctgaaatgcagaagccgtcctagttagaaaccaccccagagcccacagcttt 289
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccagcgacctgaaatgcagaagctgtcctagttagaaaccaccccagagcccacagcttt 484
Query: 290 tccacatcagcctttgagtcactggacaagtgaaaccccaggaaggccacaggggtcacc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tccacatcagcctttgagtcactggacaagtgaaaccccaggaaggccacaggggtcacc 544
Query: 350 tgggtttcccccgaacccacgtgttgtcctgtgttctatggtagggtggcttctgcttgc 409
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgggcttcccccgaacccacgtgttgtcctgtgttctatggtagggtggcttctgcttgc 604
Query: 410 ctctgccctctgttgcctctctgtgatgtgctcccatcctttccttaatggatgtcctgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 605 ctctgccctctgttgcctctctgtgatgtgctcccatcctttccttaatggatgtcccgt 664
Query: 470 tagcctaagaccatgctcaaatatctactctaagaaactgtccctgcttctcccggaact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tagcctaagaccatgctcaaatatctactctaagaaactgtccctgcttctcccggaact 724
Query: 530 ccttatccctaagcattattttgcccccatagagcacc 567
||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccttatccctaagcattattttgcccccatagagcacc 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 971
Length adjustment: 10
Effective length of query: 557
Effective length of database: 961
Effective search space: 535277
Effective search space used: 535277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
