BAC Information

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BAC

Clone NameMSMg01-080A01
Chromosome15 (Build37)
Map Location 42,333,182 - 42,333,723
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080A01.T7 (MSMg01no080_a01.b1)MSMg01-080A01.TJ (MSMg01no080_a01.g1)
ACCAG300949AG300950
length689691
length of high quality
(start - end)
545 (45 - 589)469 (78 - 546)
definitionCHROMAT_FILE: MSMg01no080_a01.b1 PHD_FILE: MSMg01no080_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:46 2005CHROMAT_FILE: MSMg01no080_a01.g1 PHD_FILE: MSMg01no080_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTGTGTCCAAAATTTGAAAGGGAGAGCTTTATGTGAAAGTTTCA
AGATGTATCCCATGGTCTTAAGTATTTCCAATAAGATACAATGTAGAAAA
GGACAGTGTGGGCAGTGCAGACAAATCAAACCCAGTGTCCAAATTACACA
CACTCTTTCCTGAGCTTTCAGTGAAGTGCAGGACCTAGATTAGTTTGTTT
ATTTTATTCTTCATTAAAGTGCACCTCTGCCTCAAACTGGAAGTTAAGTG
CCAAAATCCTATGCATGTCTCTTCTCAAAGTTCTCCCAGGAAGATGGGAA
ACAGGAAGCACGGCAAGTCCTGTGAGAAACTCTGTTTTGGAATTTGCAAT
TTGTATAGATTGACTGCACGGTTGGTAAACTATTGCTCCATGTAACAGTA
ACGTCTAAAGAGGCATCGCAAGAGAAATGGCTGATTCAATCCAAACCTTC
CAAAAACTCGACAGCGAAGCTCCCTTTCTGTATAATCAACTCTGACAGAA
AACTCCATGCACTGATGTCTGGAGTCAGCCTACCCATGTTTTGTTATGAG
ATTAAACTTCAGCTAAAACTTTTGAATGTTATCATCAGGAAAACTAACAA
CATGGCTGTCTGATTTTAGGATCTAGGGGCTTATGACTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCCACAGTGGTATGATAAG
GTACAAGGCATTACTTCAATTTTCTTGTATCTGTTGAGGCTTGTTTTGCG
ACTGACTATATGGTCAATTTTGAAGAAGGATCCATGAGGTGCTAAGAAGC
TACATTTTTTTGGGTGAATTATTCTATAGATGTTTGTTAGGTCCATTTGA
TTCATAATGTCTGTTAGTTTCATTATTTTTCTGTTTACTTTTTGTCTCAA
TATCCTGTAAGTTAGTGAGAGTGGGGTATTGAAGTCTTCCACTATTAATA
TGTGGGGTTCAATGTGTGATTTGGGCTTTAGCAATGTTTCTTTTACAAAT
GTGAGTACTCTTGTGTTTGCGGCATAGACGTTCATAATTGAGATATCATC
TCAGTATATTTTACCTTTGATGAGAGTGAAGCATCCTTCCCTGTCTCTTT
TGATTAATTTTGGATGATAACCTATTTTATTAGATATTTGAATGGCTTCT
TCAGCTTGCTTCATGGTTCTGTTTGCTTGGAAAACATTTTTCCATCCCTT
TACTCCGAGGAAGTGTTCATCCTTATTGCTGACGTGTGTTTTCCTGCATG
ACAAAACAATGTTGCATCCCTGTTTCTGCATCCATTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_a01.b1 MSMg01no080_a01.b1 CHROMAT_FILE:
MSMg01no080_a01.b1 PHD_FILE: MSMg01no080_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:46 2005
         (545 letters)



>mm_chr15_42332978_42333923
          Length = 946

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%), Gaps = 1/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgttgtgtccaa-aatttgaaagggagagctttatgtgaaagtttcaagatgta 63
           |||||||||||||   || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattctgttgtgggaaacaatttgaaagggagagctttatgtgaaagtttcaagatgta 687

                                                                       
Query: 64  tcccatggtcttaagtatttccaataagatacaatgtagaaaaggacagtgtgggcagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcccatggtcttaagtatttccaataagatacaatgtagaaaaggacagtgtgggcagtg 627

                                                                       
Query: 124 cagacaaatcaaacccagtgtccaaattacacacactctttcctgagctttcagtgaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagacaaatcaaacccagtgtccaaattacacacactctttcctgagctttcagtgaagt 567

                                                                       
Query: 184 gcaggacctagattagtttgtttattttattcttcattaaagtgcacctctgcctcaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcaggacctagattagtttgtttattttattcttcattaaagtgcacctctgcctcaaac 507

                                                                       
Query: 244 tggaagttaagtgccaaaatcctatgcatgtctcttctcaaagttctcccaggaagatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggaagttaagtgccaaaatcctatgcatgtctcttctcaaagttctcccaggaagatgg 447

                                                                       
Query: 304 gaaacaggaagcacggcaagtcctgtgagaaactctgttttggaatttgcaatttgtata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaaacaggaagcacggcaagtcctgtgagaaactctgttttggaatttgcaatttgtata 387

                                                                       
Query: 364 gattgactgcacggttggtaaactattgctccatgtaacagtaacgtctaaagaggcatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gattgactgcacggttggtaaactattgctccatgtaacagtaacgtctaaagaggcatc 327

                                                                       
Query: 424 gcaagagaaatggctgattcaatccaaaccttccaaaaactcgacagcgaagctcccttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcaagagaaatggctgattcaatccaaaccttccaaaaactcgacagcgaagctcccttt 267

                                                                       
Query: 484 ctgtataatcaactctgacagaaaactccatgcactgatgtctggagtcagcctacccat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgtataatcaactctgacagaaaactccatgcactgatgtctggagtcagcctacccat 207

             
Query: 544 gt 545
           ||
Sbjct: 206 gt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space:   500760
Effective search space used:   500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)