Query= MSMg01no080_c20.b1 MSMg01no080_c20.b1 CHROMAT_FILE:
MSMg01no080_c20.b1 PHD_FILE: MSMg01no080_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:00 2005
(372 letters)
>mm_chr15_50442584_50443356
Length = 773
Score = 673 bits (348), Expect = 0.0
Identities = 363/368 (98%), Gaps = 1/368 (0%)
Strand = Plus / Plus
Query: 6 gaattctttagtgtgtcaa-ttcagttaacagctctaagcgcatggcaagatgatcttcc 64
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttagtgtgttaaattcagttaacagctctaagcgcatggcaagatgatcttcc 265
Query: 65 agtgaatgaaaatggataataagggctctctcagtgtatagtactactctgcaggctgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtgaatgaaaatggataataagggctctctcagtgtatagtactactctgcaggctgat 325
Query: 125 taaaactgtattcacaaccttcacagtgataacaaaaatactcactttgagaaaattgat 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaaattgtattcacaaccttcacagtgataacaaaaatactcactttgagaaaattgat 385
Query: 185 agagggaaacccattcgcatctgagttctagtattttaactattgctatcaaagcacccc 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 386 agagggaaacccattcgcatctgagttctagtattttaactattgccatcaaagcacccc 445
Query: 245 tcatctgtcaccccacagaagtcaataagaaaacgctaggtagagcccatcctaagtctt 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 tcatctgtcaccccacagaagtcaataagaaaatgctaggtagagcccatcctaagtctt 505
Query: 305 aggtgaaaactaagaaactggaacccttttatttcatatactaatttgttggcttgaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggtgaaaactaagaaactggaacccttttatttcatatactaatttgttggcttgaact 565
Query: 365 tctctttt 372
||||||||
Sbjct: 566 tctctttt 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space: 277332
Effective search space used: 277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_c20.g1 MSMg01no080_c20.g1 CHROMAT_FILE:
MSMg01no080_c20.g1 PHD_FILE: MSMg01no080_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:00 2005
(475 letters)
>mm_chr15_50607388_50608265
Length = 878
Score = 893 bits (462), Expect = 0.0
Identities = 473/478 (98%), Gaps = 3/478 (0%)
Strand = Plus / Minus
Query: 1 tcctttcctgctgatggggagtttttaacctcctgatcaccagagtcctgcagcttacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcctttcctgctgatggggagtttttaacctcctgatcaccagagtcctgcagcttacgg 619
Query: 61 tggtgtgttttgtggttcacccccagtagtctgcatagatccaagtgattagccaaatac 120
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 618 tggtgtgttttgtggttcacccccagtagtctgcatagattcaagtgtttagccaaatac 559
Query: 121 tggaggtatacctattagcattgtacaatgtcaggaagactaataagccagcaacaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tggaggtatacctattagcattgtacaatgtcaggaagactaataagccagcaacaaagt 499
Query: 181 ggaagtaaggaaggtcctgattttaagttactcagaggaagctatgttacctaattgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaagtaaggaaggtcctgattttaagttactcagaggaagctatgttacctaattgttt 439
Query: 241 aggttacaaattacctggatgttcttctaaaaaatcaaaacaaaagaaaaagaaaaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggttacaaattacctggatgttcttctaaaaaatcaaaacaaaagaaaaagaaaaaacc 379
Query: 301 aattatgaggagataggtgtttacctattcaagtggttacatctattgttctatgttaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aattatgaggagataggtgtttacctattcaagtggttacatctattgttctatgttaca 319
Query: 361 atgtcctacacttgcatttttcctgtgttaatttt---tttttaatgtgagggcattgaa 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 atgtcctacacttgcatttttcctgtgttaattttttctttttaatgtgagggcattgaa 259
Query: 418 tagtaaaatggtagtcccaaataggttaagaaggtattttttttctataagttacaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagtaaaatggtagtcccaaataggttaagaaggtattttttttctataagttacaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 878
Length adjustment: 10
Effective length of query: 465
Effective length of database: 868
Effective search space: 403620
Effective search space used: 403620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
