BAC Information

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BAC

Clone NameMSMg01-081H01
Chromosome15 (Build37)
Map Location 55,592,928 - 55,593,279
singlet/doubletsinglet
Overlap geneSntb1
Upstream geneLOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp
Downstream geneLOC665348, LOC100039908, Hba-ps3, Has2, EG594843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081H01.T7 (MSMg01no081_h01.b1)MSMg01-081H01.TJ (MSMg01no081_h01.g1)
ACCAG302042AG302043
length768748
length of high quality
(start - end)
356 (44 - 399)275 (71 - 345)
definitionCHROMAT_FILE: MSMg01no081_h01.b1 PHD_FILE: MSMg01no081_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:38 2005CHROMAT_FILE: MSMg01no081_h01.g1 PHD_FILE: MSMg01no081_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCCATCTTACCCCAATAGAGATCCAATTCAAAGGATGGAAAAACAA
ACTCTCAGAAGCCAGATATTTATACACTGCATTGGACTGTAAGACAAATC
GCTTATCAGTGTAAGTTACCGGATTCTAGAGGCAAAGGTACAGGGTTTCC
CTGACATAGCACCTGTTTAAGATTTTTCTAACCAGTTGAACAAGAGAAAA
TGACAAAATAGTTTGCAAAGCACTGATGAAGTTGGTGTGGAACCATGGGA
AGTTTTCTTGACTGCTGACTTTAGCTCACTTCTTGCTTCAAACTTCGATA
AGGACACAATTTCCCCAGGAGAGGTCAGCATGCTGAAATCCTTCTCATAT
TTCATAAATGTATATGTCATTGTAAAACTGGCATCCTGCCAGCAAGATAG
ATACTGTCAGAGTCCCTCGGAGCTCAGAATGCTTATACTCAAGCCTGACC
CTGTTTTCCCAATAGGATTTTGTGCAAAGCTACTTACTATTCGGATATTC
CTCTTTCCTAATTAACTACTCACACATGAACTTAGTCTTTTAAATGTATC
TTTTATATCTTTTCCTACATTTCTACCGTGTATTCTCAAATCCCACTTCT
TTTATCTGGAGTCATGGTATTATTCGGTCCTCCCTTCTCTTATGTCTGGT
GTACCGGATTTTTAAAATTCTTCATGATATCATCCAGAATAATTTTCCCA
TTGATTAAGTATATATTT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCTCTCTTTCTTTTCTTTTTTTCTCTGG
TTCACGATGAGTTAATAAGCTCCAAGCCTCTTGCCTGGCCAGCCTGGGCA
AGAGAGAAAGGAACTCTAACAATTTGTCCTTTACTAAATCCCCCCCCCCA
GCTGCTGCCAGCAGAAATTAATTACCAAATGTATATCTGTACATATGTAT
AGACATGCGTATGTATAGTTAAAAGAGTTCAGAGCTTGTCACTGGACATC
CTTGCCAGTCCCAGATAATTACGTTTTGTGACTCCATAAGCCAGCTGACA
CTGTCACTGGGCTTGTATGCTGCCTGCATGACTCCAATCACCAGTGCCAT
ACTCCTTTTTTTTTGCTACCTGCCTTGGATAACCCTCTGAGGGCATACCT
GGGTTTTGACAACTACCTACTCATGGCCCTTGAGTGTTTGAATGTTTTCT
TCAAGGGTAATAATACTCTTTTAGTTCTATTTATACTCGGATTACTAAAC
ATAAAATGTCCGCTACGATCAAATAATGAACACTCCTCTGTAAGGGTTGG
GTGAACCCTCTCTAACTCCAATGTCCCCCCCATTTTTGTCGGTTCCTGGC
CCAATCCCATCACCCTATCTTGGTCCACTTATTAAACACCCGGTTTAATA
TTCTCCTTTCCCTCTAGTCCTCTCTCCACCTCCTCCCACTCTCGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_h01.b1 MSMg01no081_h01.b1 CHROMAT_FILE:
MSMg01no081_h01.b1 PHD_FILE: MSMg01no081_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:38 2005
         (356 letters)



>mm_chr15_55592724_55593479
          Length = 756

 Score =  634 bits (328), Expect = 0.0
 Identities = 346/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagccatcttaccccaatagagatccaattcaaaggatggaaaaacaaactctca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcagccatcttagcccaatagagatccaattcaaaggatggaaaaacaaactctca 497

                                                                       
Query: 65  gaagccagatatttatacactgcattggactgtaagacaaatcgcttatcagtgtaagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaagccagatatttatacactgcattggactgtaagacaaatcgcttatcagtgtaagtt 437

                                                                       
Query: 125 accggattctagaggcaaaggtacagggtttccctgacatagcacctgtttaagattttt 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 436 accggattctagaggcaaaggtacagggtttcactgacatagcacctgtttaagattttt 377

                                                                       
Query: 185 ctaaccagttgaacaagagaaaatgacaaaatagtttgcaaagcactgatgaagttggtg 244
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 ctaaccagttgaacaagagcaaatgacaaaagagtttgcaaagcactgatgaagttggtg 317

                                                                       
Query: 245 tggaaccatgggaagttttcttgactgctgactttagctcacttcttgcttcaaacttcg 304
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 316 tggaaccatgggaagttttctcgactgctgactttagctcacttctcgcttcaaacttcg 257

                                                               
Query: 305 ataaggacacaatttccccaggagaggtcagcatgctgaaatccttctcata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ataaggacacaatttccccaggagaggtcagcatgctgaaatccttctcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)