BAC Information

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BAC

Clone NameMSMg01-081O06
Chromosome15 (Build37)
Map Location 5,641,394 - 5,641,965
singlet/doubletsinglet
Overlap genenone
Upstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O06.T7 (MSMg01no081_o06.b1)MSMg01-081O06.TJ (MSMg01no081_o06.g1)
ACCAG302388AG302389
length687690
length of high quality
(start - end)		576 (43 - 618)601 (70 - 670)
definitionCHROMAT_FILE: MSMg01no081_o06.b1 PHD_FILE: MSMg01no081_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:14 2005CHROMAT_FILE: MSMg01no081_o06.g1 PHD_FILE: MSMg01no081_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTCATACCTTAGATCATGAAGGTTAGGTCCAAAGTGCCCTACCCAC
CCCCACCCCCAGTGGCAGTGCTGGTGACATTGTCCTAAGTGGAAGATCTT
TGGTCAAGGAAACAGAAGGATTGGTATCAGATAAACAGGCTTTAATGTGG
GTTTCTATTTACTAGAAAAGTAGATCTCCCTAGGTGAGTTCCCGTTTGGC
AGGAACTTCCCCTCAATCCTATAGGGATCTCCCTTAACCTTTCCCCAGAG
GTCAAGTACCAACCTCCAGGTCAATCTGAACATCCGATGTGAGTTCAGAT
CCCTGCCCCATCAGACAAAATCTGCTTGCTTTTCCACCATTTTGTCCTTC
TTGTCCCACTTCCCCAGAGATGGCCCTGGCAGCTTGATCCCCAATAAATC
TTTATTTCTACCCACAGAGCAATCTAGTTCAGCAGTTTCTCTGCATCACC
TCTTACAATGATCACACTCTATTAGGAACATAGATGATACATTTGTGCCT
TCTCTGTTGTCAGCAAATCACAGTTTATATCATTTTTATCTCACTGCACG
TGCATGCATGGGCGGTATATCTTTTGTTGGTTTGTTCTATGGTGCAAAGT
CATGGGACTGGGTTTTCTGAGTAGCTTTGACATGTTN

TGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGACTGCAGAGCAACTTCTACTACCATGAG
CGTTATTGTAGAAGGGTGAAGGCTCTAGGTAGGCACCATCTCAATTTCTC
CATATTCAATGAGTTGTATAGGTGTTGTCTTCTGCAATCAAGTCTTAATA
TCAGTTTGTGGATAGCAACTAGTAACAGAAGGAAGGTAAATGCCAATCCT
GATACAGTCTCTTCCTCTTATAATGGTAACTTGCCCACAAGATATGCTGC
TGCATGGATGGCTCAAAGCTCCTGGGAGTAACCAATCAAGATCCGGTTTA
ATGTAAGTCTTGTTCCATGTGATGGACTCCATACCCAGTACTTCTTGGGT
GGCAAAAACCTGAGACTAGACGGGCCAGAAGACCTAGGAGAAAAAGAAGT
ACTAGTGTTCAGCTGAAGGAATGTAGCAATCAAATGACTCCTCATGTCAC
TCAGCTATATTCACAGTTCAGTGCCGTGCTCAGCCCTCATCAGTGGTGCT
TCCTCCTGCAGCAGACAGAAATAAGGACAAATGCCCACAGCCAGACAGTA
TGCAGAGAGTAAGAGACCTTTAAACAGTCCCCTTAGATAGGATGTCTCCA
TCAAATCTCCCCCCTCCCCCATCAGAGGTTAAGAAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o06.b1 MSMg01no081_o06.b1 CHROMAT_FILE:
MSMg01no081_o06.b1 PHD_FILE: MSMg01no081_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:14 2005
         (576 letters)



>mm_chr15_5641190_5642165
          Length = 976

 Score = 1067 bits (552), Expect = 0.0
 Identities = 567/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctcataccttagatcatgaaggttaggtccaaagtgccctacccacccccac 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattctcctcaaaacttagatcatgaaggttaggtccaaagtgccctacccacctccac 264

                                                                       
Query: 65  ccccagtggcagtgctggtgacattgtcctaagtggaagatctttggtcaaggaaacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccccagtggcagtgctggtgacattgtcctaagtggaagatctttggtcaaggaaacaga 324

                                                                       
Query: 125 aggattggtatcagataaacaggctttaatgtgggtttctatttactagaaaagtagatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggattggtatcagataaacaggctttaatgtgggtttctatttactagaaaagtagatc 384

                                                                       
Query: 185 tccctaggtgagttcccgtttggcaggaacttcccctcaatcctatagggatctccctta 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctaggtgagttcccatttggcaggaacttcccctcaatcctatagggatctccctta 444

                                                                       
Query: 245 acctttccccagaggtcaagtaccaacctccaggtcaatctgaacatccgatgtgagttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 acctttccccagaggtcaagtaccaacctccaggtcaatctgaacatccaatgtgagttc 504

                                                                       
Query: 305 agatccctgccccatcagacaaaatctgcttgcttttccaccattttgtccttcttgtcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agatccctgccccatcagacaaaatctgcttgcttttccaccattttgtccttcttgtcc 564

                                                                       
Query: 365 cacttccccagagatggccctggcagcttgatccccaataaatctttatttctacccaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacttccccagagatggccctggcagcttgatccccaataaatctttatttctacccaca 624

                                                                       
Query: 425 gagcaatctagttcagcagtttctctgcatcacctcttacaatgatcacactctattagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagcaatctagttcagcagtttctctgcatcacctcttacaatgatcacactctattagg 684

                                                                       
Query: 485 aacatagatgatacatttgtgccttctctgttgtcagcaaatcacagtttatatcatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacatagatgatacatttgtgccttctctgttgtcagcaaatcacagtttatatcatttt 744

                                           
Query: 545 tatctcactgcacgtgcatgcatgggcggtat 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 tatctcactgcacgtgcatgcatgggcggtat 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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