BAC Information

Click to search

BAC

Clone NameMSMg01-082L19
Chromosome15 (Build37)
Map Location 21,618,476 - 21,734,818
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082L19.T7 (MSMg01no082_l19.b1)MSMg01-082L19.TJ (MSMg01no082_l19.g1)
ACCAG303035AG303036
length753716
length of high quality
(start - end)		397 (35 - 431)643 (64 - 706)
definitionCHROMAT_FILE: MSMg01no082_l19.b1 PHD_FILE: MSMg01no082_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:17 2005CHROMAT_FILE: MSMg01no082_l19.g1 PHD_FILE: MSMg01no082_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,618,476 - 21,618,870)(21,734,177 - 21,734,818)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTTAGAT
AATGTCTTTCTTAAGTGAACACACATCAGATTATTGTCACATTTACTTCT
TGAAGATGAATGTGTGCAAGTTTGACTTTATTAGAATAATTGACAATTTA
GTCAGTTTATATTTTATGATGTGCCGTGTGCTAATATGAACAGAATAACA
GAAGCTGAGATTGATCACCTCAGTCCAGCAAACTGCCTCCTGGCACCTTA
TAATATCATTATAGTACGAAGAAAGGATGAGTATGGGGAACCCACACTGG
GTACAGATTCATGTTTATTTTCTGTGTCCGCACCTACTTACTTAGACTGA
TTTATGACTATCTACTCTGTTAGGATTACTGATCAACATAATTTGTGCAC
ATGAGTTGCCTGTGTTTGATTATTTGCTACATACACACAAAAAATTGAGT
GTATTTTATTTGACCATACCTTAATTATTACAAAAAGGCGGATTTTTTCG
TAAAAATCTTCTTTCCTCCCCCCCTCCCCTTAATTAAATCACTAGCTCCC
AAAACCTATATTTTCCGCCCCCATTGGTATTAACGTGTCCTCCCTTTCTC
TTCTCCCTTTCTCCTATTCTCCCCCCCCCCCGTGCTCGGATTTTGCCTTT
TTTTTCCCCCCCCTTCCTTTTTTTTTCCTCCTTCCCCCCTCTTGGCCTTT
CTTTTTTTCCCGGATATTACGCCCTTTTTTTTTACCTCCCTTTTTCCGTC
GGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAGTAGGTTAAATTTGAAATGCAGAGTGTGTGCAGTA
GAAAAATAATCTCTGGCACCATTGAAATCTACTTTGGATATATTTACAGC
CAACTTAAAGTTCCAAACTCTTATATAATGACAGTTCAGAGATGTCTGTG
ATGGTTCTACATAAGAACATTTATGAAAGACACAATTACATAAAATTATA
TTCAAATATTCAAAATAAAATGAAATAATAATATGGTAGATTACACAGGT
CTGAGAAATGGTAAATTACTAATTAGAGTTTTAAACTATTGAAGTGTGAT
ATGATGAGGTTACATCTAGATGAACCTGTGATAAACTGAAAGTATGCTAA
TGGTTTATTTACTTGGCTTCATGCACTGATCATGATGCCTTAGCTTTAAG
GCACACTGTGATGTGTTCTATTTACTTCATCACTGTGTGGTAGCTTGAAG
CTTTGGGTGTTGTTATAGCACATAATTGGGGAAGTTAAATATTAGGTGCT
ATTTCCTAGATCATGTATCAGTAGCTGGTAACATGTACAAAGTTGAAAAC
TTGAAGTTGATTCTATTGAAAATGTGTGAATTTTACATGGATGTAAGACT
AAAGAAACTAAATTGTTCCATTATGAAATGAGAGGTACACACACACACAC
ACACACACACACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_l19.b1 MSMg01no082_l19.b1 CHROMAT_FILE:
MSMg01no082_l19.b1 PHD_FILE: MSMg01no082_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:17 2005
         (397 letters)



>mm_chr15_21618274_21619070
          Length = 797

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctttagataatgtctttcttaagtgaacacacatcagattattgtcacatttac 62
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctttagataatgtatttcttaagtgaacacacatcagattattgtcacatttac 262

                                                                       
Query: 63  ttcttgaagatgaatgtgtgcaagtttgactttattagaataattgacaatttagtcagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcttgaagatgaatgtgtgcaagtttgactttattagaataattgacaatttagtcagt 322

                                                                       
Query: 123 ttatattttatgatgtgccgtgtgctaatatgaacagaataacagaagctgagattgatc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttatattttatgatgtgccgtgtgctaatatgaacagaataacagaagctgagattgatc 382

                                                                       
Query: 183 acctcagtccagcaaactgcctcctggcaccttataatatcattatagtacgaagaaagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctcagtccagcaaactgcctcctggcaccttataatatcattatagtacgaagaaagg 442

                                                                       
Query: 243 atgagtatggggaacccacactgggtacagattcatgtttattttctgtgtccgcaccta 302
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 atgagtatggggaacccacactgggtacagactcatgtttattttctgtgtccgcaccta 502

                                                                       
Query: 303 cttacttagactgatttatgactatctactctgttaggattactgatcaacataatttgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttacttagactgatttatgactatctactctgttaggattactgatcaacataatttgt 562

                                              
Query: 363 gcacatgagttgcctgtgtttgattatttgctaca 397
           |||||||||||||||||||||||||||||||||||
Sbjct: 563 gcacatgagttgcctgtgtttgattatttgctaca 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_l19.g1 MSMg01no082_l19.g1 CHROMAT_FILE:
MSMg01no082_l19.g1 PHD_FILE: MSMg01no082_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:17 2005
         (643 letters)



>mm_chr15_21733776_21734818
          Length = 1043

 Score = 1226 bits (634), Expect = 0.0
 Identities = 640/642 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    agtaggttaaatttgaaatgcagagtgtgtgcagtagaaaaataatctctggcaccattg 61
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1043 agtaggttaaatttgaaatgcagagtgtgtgcagtagaaaaataatttctggcaccattg 984

                                                                        
Query: 62   aaatctactttggatatatttacagccaacttaaagttccaaactcttatataatgacag 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  aaatctactttggatatatttacagccaacttaaagttccaaactcttatataatgacag 924

                                                                        
Query: 122  ttcagagatgtctgtgatggttctacataagaacatttatgaaagacacaattacataaa 181
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  ttcaaagatgtctgtgatggttctacataagaacatttatgaaagacacaattacataaa 864

                                                                        
Query: 182  attatattcaaatattcaaaataaaatgaaataataatatggtagattacacaggtctga 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  attatattcaaatattcaaaataaaatgaaataataatatggtagattacacaggtctga 804

                                                                        
Query: 242  gaaatggtaaattactaattagagttttaaactattgaagtgtgatatgatgaggttaca 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  gaaatggtaaattactaattagagttttaaactattgaagtgtgatatgatgaggttaca 744

                                                                        
Query: 302  tctagatgaacctgtgataaactgaaagtatgctaatggtttatttacttggcttcatgc 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  tctagatgaacctgtgataaactgaaagtatgctaatggtttatttacttggcttcatgc 684

                                                                        
Query: 362  actgatcatgatgccttagctttaaggcacactgtgatgtgttctatttacttcatcact 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  actgatcatgatgccttagctttaaggcacactgtgatgtgttctatttacttcatcact 624

                                                                        
Query: 422  gtgtggtagcttgaagctttgggtgttgttatagcacataattggggaagttaaatatta 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  gtgtggtagcttgaagctttgggtgttgttatagcacataattggggaagttaaatatta 564

                                                                        
Query: 482  ggtgctatttcctagatcatgtatcagtagctggtaacatgtacaaagttgaaaacttga 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  ggtgctatttcctagatcatgtatcagtagctggtaacatgtacaaagttgaaaacttga 504

                                                                        
Query: 542  agttgattctattgaaaatgtgtgaattttacatggatgtaagactaaagaaactaaatt 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  agttgattctattgaaaatgtgtgaattttacatggatgtaagactaaagaaactaaatt 444

                                                      
Query: 602  gttccattatgaaatgagaggtacacacacacacacacacac 643
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443  gttccattatgaaatgagaggtacacacacacacacacacac 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |