BAC Information

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BAC

Clone NameMSMg01-083B06
Chromosome15 (Build37)
Map Location 77,455,006 - 77,455,166
singlet/doubletsinglet
Overlap geneLOC666661
Upstream geneVps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik
Downstream geneA330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083B06.T7 (MSMg01no083_b06.b1)MSMg01-083B06.TJ (MSMg01no083_b06.g1)
ACCAG303296AG303297
length777751
length of high quality
(start - end)
164 (41 - 204)297 (69 - 365)
definitionCHROMAT_FILE: MSMg01no083_b06.b1 PHD_FILE: MSMg01no083_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:42 2005CHROMAT_FILE: MSMg01no083_b06.g1 PHD_FILE: MSMg01no083_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAGCCTGAGAACAGTGAGGTTTGGTGGGGATTTTGCAGTCACCTCTGAC
CCCAGAGGAAGGGGACACTGAAGGCACAAATTTCCAGGAGGGAGGGAGAC
CCCAGTCACTTGTGGGAACGGTGTATTTGATGAAGGCTCAGCAAACTTCT
AGACACTGAAGTTAGGTTGTCAACATTTCTGTTCCTTGAGAATACTTTAA
GTCCTGTATTCTGTTCCCAGTATGTATGCACCTTGTCTTTCTATGCCCTG
CCCGCGCACCTTGTGCTTGCTCTGTTCTGCCCGCGCTGCTTCCTCCAGCA
TGATTCTTTTTTTTTCCCCCCCCCGCCGCTCCCACCTCCTCCGCCTCCTC
CCGTTTTGAGCCCTCTTCTTCTTTTCTCCCTATTTTTCTCTCTTCTTATC
TATCTTGACTTTTTTCCCCTTCATTTTTTATTTTTTTTTCTTTATTCTCA
TTTTTTTCTATTTCAATTATGTTTCTATTATTACTACTTGCACTTAGATT
CATATCTCATTAATTTATCTCCCCATCTCTCACCTATTTTCACCCTTTAT
TTCCTTATTCATTTTCTTATCCTTTTTTATACTTTTTTTATTATTATTTT
CTTCTCTATATTTCTTTTTATCTTCTTTATACTCCTTTCTTTATCTTCTT
TCATTTCTCACTTCTTCTCTTTCTTCATTCCCACTCTTTACTATATCCTC
TTATCTATCCAATCATTATAACTACAC
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGCCTGATTAAGGCGATGTGTGGTGGGGAT
TTTACTGTCACTTCTGACCCCAGAGGAAGGAGACACTGAAGTCATGGACT
TCCAGGAGGGAGGGAGACCCCAGTCACTCATGCTGATGGTGTATTTGATT
AAGGCACAGAAAACTGGACACTGAAGTTAGGTTTCCATGTTCAGCTGTTG
ATGTGTTTGGCCTTGGCTTTCCTCAGGAGGAGTCCCATGAGGTCAGCTTC
ACAGTGCCCCTACTCTCTGCTCTTTACTGCCTGTCACTCAGCTCATCTGC
TGTGAGTCTCCAGCTGAAGGATCTGACAGACTTGTTGTGTCTTTTGTCTT
ATAGCATTAGTCCTGGACAGTGCCTTCCTGCCTGCGGTAACGTCTATCAT
ATCAATTGTTCTTTCCCATGGGTACTTATCTTGTCGTGAGAAACTCCTCG
CGTCCTACTCCATTGAATCTTTGTAGTCCAGATGTAATACTGATTATTCT
GTTTTAAGTTCTTTGATGGTTACACTATTATGTTGCTTATATTTGTATTC
TATTTTCTTCCTTTTTCTTTGTACAATTCTTATTTTCTCCTTTCTTATGT
TTATTTATCTATATTCTAACTTTCTGATTTTTATATGTGATATCTATGCA
TGGGATTTTCTTGTTCACTTACTTTTTCTTTCATTATTTTATCACAACTA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_b06.b1 MSMg01no083_b06.b1 CHROMAT_FILE:
MSMg01no083_b06.b1 PHD_FILE: MSMg01no083_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:42 2005
         (164 letters)



>mm_chr15_77454803_77455366
          Length = 564

 Score =  236 bits (122), Expect = 5e-67
 Identities = 152/162 (93%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcagcctgagaaca-gtgaggtttggtggggattttgcagtcacctctgaccc 62
           ||||||||||||||||||| | ||||||| ||||||||||||| | ||||||||||||||
Sbjct: 364 ggaattctcagcctgagaa-aggtgaggtgtggtggggattttactgtcacctctgaccc 306

                                                                       
Query: 63  cagaggaaggggacactgaaggcacaaatttccaggagggagggagaccccagtcacttg 122
           |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||  
Sbjct: 305 cagaggaaggagacaccaaaggcacaaatttccaggagggagggagaccccagtcactca 246

                                                     
Query: 123 tgggaacggtgtatttgatgaaggctcagcaaacttctagac 164
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgggaacggtgtatttgatgaaggctcagcaaacttctagac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)