Query= MSMg01no083_c02.b1 MSMg01no083_c02.b1 CHROMAT_FILE:
MSMg01no083_c02.b1 PHD_FILE: MSMg01no083_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:46 2005
(613 letters)
>mm_chr15_44768253_44769266
Length = 1014
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtatctccaagaagtagaatgtgcaaatgcatacaggaaaaaaggattatcta 64
||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 205 gaattctgtatctccaagaagtagaatgtacaaatgcttccaggaaaaaaggattatcta 264
Query: 65 aaagtggtcttacttaatcattccaccactcccaatgacatatttggagattctgtgctt 124
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 aaagtggtcttacttaatcactccaccactcccaatgacatatttggacattctgtgctt 324
Query: 125 tctgttcccaaaactttatacttagaatatttgcatgttttttctccaaaggattgtcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgttcccaaaactttatacttagaatatttgcatgttttttctccaaaggattgtcct 384
Query: 185 tggcaggagacacacaggggtaactagtaaactcactaaaacaatcatcatctctttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcaggagacacacaggggtaactagtaaactcactaaaacaatcatcatctctttttc 444
Query: 245 atatactttggaccttgtgcatctggaatctggggaaaatgtcat-gcatgcagaagtca 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 atatactttggaccttgtgcatctggaatctggggaaaatgtcattgcatgcagaagtca 504
Query: 304 acaactttcactgggaagaggacaaaggacactcccatacagtggaaaagaagtgaacat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaactttcactgggaagaggacaaaggacactcccatacagtggaaaagaagtgaacat 564
Query: 364 gtgtggcacttagtaggtccaggtgggtttcctgccatccttggcttcactgaaaccatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtggcacttagtaggtccaggtgggtttcctgccatccttggcttcactgaaaccatg 624
Query: 424 aataaacaagcagagccacataacagagaaacgcgattactatgtgcacaaacacacctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aataaacaagcagagccacataacagagaaacgcgattactatgtgcacaaacacacctc 684
Query: 484 agaggaatcatttggtcatacatgctggtaaggcatctgagcaaaatagcaaactaacaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaggaatcatttggtcatacatgctggtaaggcatctgagcaaaatagcaaactaacaa 744
Query: 544 aggtgcagaaagtttgaaatggtgactggaggaagtaggaaggagctttggctgtgtaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggtgcagaaagtttgaaatggtgactggaggaagtaggaaggagctttggctgtgtaaa 804
Query: 604 caaacagtga 613
||||||||||
Sbjct: 805 caaacagtga 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space: 605412
Effective search space used: 605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_c02.g1 MSMg01no083_c02.g1 CHROMAT_FILE:
MSMg01no083_c02.g1 PHD_FILE: MSMg01no083_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:46 2005
(540 letters)
>mm_chr15_44925022_44925961
Length = 940
Score = 816 bits (422), Expect = 0.0
Identities = 468/486 (96%), Gaps = 7/486 (1%)
Strand = Plus / Minus
Query: 62 ctacaggacatgagctatccagagaattttttagcatagcacgagacag---cttgga-a 117
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 940 ctacaggacatgagctatccagagaattttttagcatagcacgagacagcttcttggaga 881
Query: 118 aagcaggtctaagagaaagatagcagaacagagaaaaactaagttggaaagctctctccc 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 880 aagcagatctaagagaaagatagcagaacagagaaaaactaagttggaaagctgtctccc 821
Query: 178 acagagcataggttgtcagttcagacccacaatttgagttgagtcctttgttttcagctc 237
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct: 820 acagagcataggttgtcagctcagacccgcaatttgagttgagtcctttgttttcatctc 761
Query: 238 ccagacaccacttctcttagaacacctctccaaaccaaggcaggtctttgggaaccacat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ccagacaccacttctcttagaacacctctccaaaccaaggcaggtctttgggaaccacat 701
Query: 298 cctgcaggagccctcttctcttcatgtcatgatgtcgcatcaccaaagtcatgtgtatgt 357
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 700 cctgcaggagccctcttctcttcatgtcatgatgtcacatcaccaaagtcatgtgtatgt 641
Query: 358 aaggtcctagagtcagtccctaacataacaaaaggaacctccaatattgttgttatagac 417
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 640 aaggtcctagagtcaatccctaacataacaaaaggaacctccaatattgttgttctagac 581
Query: 418 ttgtgacaggagtccagaaatatatgtgtttgagcagagataagaggtactcaaaactga 477
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 580 ttgtgataggagtccagaaatatatgagtttgagcagagataagagggactcaaaactga 521
Query: 478 aaagcaaagctaaaacatgggcttttagcaat---aacaagtgtgtgtgtgtgtgtgtgt 534
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 520 aaagcaaagctaaaacatgggcttttagcaatgataacaagtgtgtgtgtgtgtgtgtgt 461
Query: 535 gtgtgt 540
||||||
Sbjct: 460 gtgtgt 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
