BAC Information

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BAC

Clone NameMSMg01-083D24
Chromosome15 (Build37)
Map Location 91,031,872 - 91,032,145
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
Downstream geneLOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D24.T7 (MSMg01no083_d24.b1)MSMg01-083D24.TJ (MSMg01no083_d24.g1)
ACCAG303425AG303426
length724726
length of high quality
(start - end)
275 (74 - 348)386 (72 - 457)
definitionCHROMAT_FILE: MSMg01no083_d24.b1 PHD_FILE: MSMg01no083_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:55 2005CHROMAT_FILE: MSMg01no083_d24.g1 PHD_FILE: MSMg01no083_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATATTTGCGGCGCTAAACGACTCCTATATTCAGAAATCCGCGGAATTC
ACTTACAGACTCTGCTAGAAATAGTTGATAGTGACTGTAATGTAATGTAT
TCAAATTTGATTTTTAAAAAGTGAATATTAATGGATTGTAACTTCAGCTC
CAGGGGATACAACACCGTATTGTGGATTCTACAGACAACTGCTCTCATGT
GCACATATACATAATCTAAAATAATATATATTAAATATTGCATGGAAATT
TTAAAGACATAAACACTGTAGGTGTTCCTGTCAAGTCATGAACTTCTTGG
TGATTTTAAGATTAATGTTTTAGTTGCTGCTGGAAGTTGCAAAAGCATTG
TCCTAGAGGAAACACAGCCTAAGATTGCTTTTCTCAACATGAAGTACTGC
TATACCTCAGGCATCAGCTACCATGGGCCTAAACCACAGAATAAAGAAAT
GTGGCTACAGTATCTTAGGACTTTAGTTTTGATCAGAGATCAGAAAGAGG
AGAGCCTTGCTTTAAATGTAAGCTGGCATCTATACACTATAGAGTAACTC
TAATATAGGTGAGATGCTGGGATGCCCCAGGTCTGCTTGATGATTCAGTG
ACGAAAGTTGAATGTGTTCACGCCGTATGATCAGATTTTATCCTTGCACT
CCATACTCAGGAAATATAAAAACGACTGCTGATATTGTCCTATGACTTTT
AATTGCTTATGTGGTCATCATATT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTGTATTTGTCATTAAAAAGAGAATGG
TCCCCCTTCTAAGTGGGTTTTCACACTTGGGCCTTGCTTCTTGTTAAGCT
TCCTATGGTCTTAGAGTTGTATCATGGGTATTCCAAGCTTTTTGACTAAT
ATCCACTTAGCAGTGAGTACATACCATGCATGGACTTTTGGATCTGGGTT
ACCTCACTCAGGATGATAGTTTCAAGTCCCATCCATTTGCCTGCAAAATT
CATGATGTCCTCAGTTTTATTATCCTGAATAGTATTTTATTGTGTAAGTG
AAGCACATTTTCTGTATCCATTCCTTGGTTGAGGGACATCTGGGCTCTTT
CCAGCTTCTAGCTATTACAAATAAGGCTGCTCTGAACTTAGTGGAGCAAG
TATCCTAGTGGTATAGTGTAGCATCTTTTGGGTATATTCCCAGGGGTGGT
ATAGCTGGATCTTAAGGTAGAGCTATTTCCTATTTTCTGATGAACAGTCA
GACTGATTTCCAGAGTGTTTGTACCAGTTTCGAATCCCATCAGCAATGGA
AGAGTGTTCCTCTTCCTCCACATCCTTGCCGGTGTTACTGTTGCTCGAGT
TTTTTATCCTAACCATTCTGATAGGTGTCTGGATGAAAAATCCTTTAGAT
TCTCTATTCCCTGAAGACAAAGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d24.b1 MSMg01no083_d24.b1 CHROMAT_FILE:
MSMg01no083_d24.b1 PHD_FILE: MSMg01no083_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:55 2005
         (275 letters)



>mm_chr15_91031672_91032346
          Length = 675

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgatagtgactgtaatgtaatgtattcaaatttgatttttaaaaagtgaatattaatg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gttgatagtgactgtaatgtaatgtattcaaatttgacttttaaaaagtgaatattaatg 260

                                                                       
Query: 61  gattgtaacttcagctccaggggatacaacaccgtattgtggattctacagacaactgct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattgtaactccagctccaggggatacaacaccgtattgtggattctacagacaactgct 320

                                                                       
Query: 121 ctcatgtgcacatatacataatctaaaataatatatattaaatattgcatggaaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatgtgcacatatacataatctaaaataatatatattaaatattgcatggaaatttta 380

                                                                       
Query: 181 aagacataaacactgtaggtgttcctgtcaagtcatgaacttcttggtgattttaagatt 240
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 381 aagacataaacactgtaggtgttcctgtcaaatcatgaacttcttggtgattttgagatt 440

                                             
Query: 241 aatgttttagttgctgctggaagttgcaaaagca 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgttttagttgctgctggaagttgcaaaagca 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)