Query= MSMg01no083_e17.b1 MSMg01no083_e17.b1 CHROMAT_FILE:
MSMg01no083_e17.b1 PHD_FILE: MSMg01no083_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:59 2005
(620 letters)
>mm_chr15_55355401_55356421
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 610/617 (98%), Gaps = 1/617 (0%)
Strand = Plus / Plus
Query: 5 gaattctctttcacctgtcctgagttgagctcatgttaggagatacatctgacttgtcct 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttcagctgtcctgagttgagctcatgttaggagatacatctgacttgtcct 264
Query: 65 aatatctgatcttatacaatgtaatctttatcacatctcagactatctgtcagctgaaaa 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 aatatctgatcttatacaatgtaatctttatcacatctcagactgtctgtcagctgaaaa 324
Query: 125 tgtctccatcagtatttgtgagatacttctcagaagcatctaattctggagcttcaattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctccatcagtatttgtgagatacttctcagaagcatctaattctggagcttcaattg 384
Query: 185 ttcagacttctagcaggacaaatgttctttagacatgaggcagaagacataggagacgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagacttctagcaggacaaatgttctttagacatgaggcagaagacataggagacgag 444
Query: 245 aaatatgaaagatcagcttctgaagcagcttgcaaattcaagttta-ttagatatttcag 303
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 445 aaatatgaaagatcagcttctgaagcagcttgcaaattcaagttaaattagatatttcag 504
Query: 304 gatgtgagggaaatatttaaatcttaagtttattcattggtgtgtacccgtgtttatctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgtgagggaaatatttaaatcttaagtttattcattggtgtgtacccgtgtttatctt 564
Query: 364 atcatgcacataaattccagccatcacattttaagtatcatctgccatgcagtcagccat 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatgcatataaattccagccatcacattttaagtatcatctgccatgcagtcagccat 624
Query: 424 gttggtgtgctggtgaataagagaacttggaccagattatgctaaaatgctcatgttacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttggtgtgctggtgaataagagaacttggaccagattatgctaaaatgctcatgttacc 684
Query: 484 taggggcaacacaaattctgtcagtgaagagtttttaaactgactgattggaactagcat 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 taggggcaacacaaattctgtcattgaagagtttttaaactgactgattggaactagcat 744
Query: 544 tttggagcagtttgggggttttataggatagactgggatgaagaggaacattccgtgagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 tttggagcagtttgggggttttataggatagactgggatgaagaggaacattcagtgagg 804
Query: 604 aacccccatgtgagctt 620
|||||||||||||||||
Sbjct: 805 aacccccatgtgagctt 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_e17.g1 MSMg01no083_e17.g1 CHROMAT_FILE:
MSMg01no083_e17.g1 PHD_FILE: MSMg01no083_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:59 2005
(481 letters)
>mm_chr15_55468924_55469805
Length = 882
Score = 855 bits (442), Expect = 0.0
Identities = 472/482 (97%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 1 tcagtacgtgttttccatggagttttacgctagcccatgccctgtgttctgccagcactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcagtacgtgttttccatggagttttacgctagcccatgccctgtgttctgccagcactg 623
Query: 61 gaagaggcatcatttagcagatgcctatgcaaagcgaaactgcctaaaggcccaggattt 120
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 622 gaagaggcatcgtttagcagatgcccatgcaaagcgaaactgcctaaaggcccaggattt 563
Query: 121 ggcttcctcagctctgtgtgtttatagggttacagttgtagtttaaagcatcatctcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcttcctcagctctgtgtgtttatagggttacagttgtagtttaaagcatcatctcccc 503
Query: 181 aaagagttcccatacaaccccattgccaagggacactgaacagtgttttcagat-ggggg 239
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 502 aaagagttcccacacaaccccatttccaagggacactgaacagtgttttcagatgggggg 443
Query: 240 gggcgttggtaatttaggagcttgttgataaaaatattcccaagatagcaacttaagata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggcgttggtaatttaggagcttgttgataaaaatattcccaagatagcaacttaagata 383
Query: 300 ttttatagacccttgttggatttactaggctcctcaagaatcccggtcttcaggaatctt 359
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 382 ttttatagacccttgttggatttactaggctcctcaagaattctggtcttcaggaatctt 323
Query: 360 agtcttgaatgtgggggtgagggctctatgccttgcacttctttgtaatgggggcatctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtcttgaatgtgggggtgagggctctatgccttgcacttctttgtaatgggggcatctg 263
Query: 420 tgaagctagtggtttttgtagacggtggtcgaagatatctcaccacaggacattgacttt 479
|||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 262 tgaagctagtggcttttgtagatggtggtcgaggatatctcaccacaggacattgacttt 203
Query: 480 tg 481
||
Sbjct: 202 tg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
