BAC Information

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BAC

Clone NameMSMg01-084O09
Chromosome15 (Build37)
Map Location 49,899,148 - 49,899,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039600, LOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O09.T7 (MSMg01no084_o09.b1)MSMg01-084O09.TJ (MSMg01no084_o09.g1)
ACCAG304626AG304627
length716696
length of high quality
(start - end)
84 (154 - 237)200 (72 - 271)
definitionCHROMAT_FILE: MSMg01no084_o09.b1 PHD_FILE: MSMg01no084_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005CHROMAT_FILE: MSMg01no084_o09.g1 PHD_FILE: MSMg01no084_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTTTXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGATCCGCGG
AATTCAGTTCTTACAGAGAATTTACCTTCTGTGCAAGCTTCTGCAAGGTT
GAGGAACTTATGCATACCTCTATGACATTGTTAGGCATGAATGTTGCAAG
TCCAGAGCCAAGTTTTCTCATGGCATATTTTGCTTCCTTTATAGTCATCT
ATTGCCCTCTTTCATATGAAACCTATCATCTGTGTGACCATTACGTATAT
CTTTTGTAATGTATGACTAGACCCCCAGCTTTCATAGAATGTTCCAGAAT
TATTTCCCCAGTGTGACTCACCTTTAGTATCACATTGTACAGATCACTCC
CATTCCATTATATTTATCTTGTTATGCTTTGCTGCGTTTATGCTTATACA
CCATTATTTCCCCATACACTTCTCCTTCTCACTATTTTTACGTGTTTTTG
TGCTCGTTCTATTCTTTACTCTTTTTCCTTTCCACTGTATTTTAACTAAT
TATTTGATTTAATATTTATTCTTTGAATTACTGCTTTGAAAACCTATTAT
ATTTTATAAATGTATTTAAATAATGACAATAATCTTTATAATTTAGTCAT
GTCAATTTATTTTCCAAACTATTTATACTCCCTTTTATCCTAACTAAGAC
TCCTCTATTCCTTTATACAATGCACTTTTCCCAATTCTTATGTCCACTAC
TTATATCACTCTATTT
NCGATGATAGTGGAGGCTGGCGGCGCCTGTTCACAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAATCCACTCCCTTTTCTTACCAGACATTGG
GAAAGATTTATTGCATAAAATATAGATAGGTAGGTAGATAGGTAGATAGA
TAGATGATAAGTAAATATAAATGAAAATATAGTTATATAATTTTATTGTG
GCATACACTAAATTTCATTATAACTTATATTTTCAGAATATTATTCAAGC
ATGACAAATTAAATCCCTTCCATACTTACCACTTCTTCCTAGTCTCTGAT
AACAGTTACAGTGTTTTCAAGTTCATTGATCCTGTTTGTTAGAGCATTTT
TACTGAATTTTATCACACATAAATACTATAGATTTACCTCACCTATCTAT
ATTTTGCCCACTATAGGAGCCAGATGATATATCATTATAAAGATACAGTG
CAATTTGTCTACCCCACTAGTCCTTGTATATTTAGATTGACTTCTAATTT
AACTAGTAATTTATTGAATTTTTGATTACTACTTGAGCATCATTCCCACC
TTTTACTTTCTTTATGTTTTTGTTTTCTATGTATTATTTGGATTCCTATG
TTATCTTATCTTTCATCTTTTATTAATCCCTTATTCCTGTTTCTATTATG
GGCACTTGTTTTTATTAATTATTTATTTGTCTTTATGTCCCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o09.g1 MSMg01no084_o09.g1 CHROMAT_FILE:
MSMg01no084_o09.g1 PHD_FILE: MSMg01no084_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:03 2005
         (200 letters)



>mm_chr15_49898949_49899548
          Length = 600

 Score =  358 bits (185), Expect = e-103
 Identities = 197/201 (98%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccactcccttttcttac-cagacattgggaaagatttattgcataaaatatagatagg 59
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 200 atccactcccttttcttacacagacattgggaaagatttattgcagaaaatatagatagg 259

                                                                       
Query: 60  taggtagataggtagatagatagatgataagtaaatataaatgaaaatatagttatataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taggtagataggtagatagatagatgataagtaaatataaatgaaaatatagttatataa 319

                                                                       
Query: 120 ttttattgtggcatacactaaatttcattataacttatattttcagaatattattcaagc 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 ttttactgtggcatacactaaatttcattataacttatattttcagaatattattcaagt 379

                                
Query: 180 atgacaaattaaatcccttcc 200
           |||||||||||||||||||||
Sbjct: 380 atgacaaattaaatcccttcc 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)