BAC Information

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BAC

Clone NameMSMg01-086E02
Chromosome15 (Build37)
Map Location 81,279,177 - 81,279,752
singlet/doubletsinglet
Overlap geneXpnpep3
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Dnajb7
Downstream geneRbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086E02.T7 (MSMg01no086_e02.b1)MSMg01-086E02.TJ (MSMg01no086_e02.g1)
ACCAG305618AG305619
length667680
length of high quality
(start - end)
612 (50 - 661)358 (55 - 412)
definitionCHROMAT_FILE: MSMg01no086_e02.b1 PHD_FILE: MSMg01no086_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:55 2005CHROMAT_FILE: MSMg01no086_e02.g1 PHD_FILE: MSMg01no086_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCCTATTTCGAGAGGATCCGCGGAATTCCAGTGGATTCGCCTACCCA
CATCCTCTATTTGATCCCCAGCAAAGGGGTGGGGAGATTGCCTTTTTTTG
GGAAAGGAAGAACAGCAATGTTCTATTATCCTTACAATTTATATGTCTTA
AAAAGGAAGACACAAAATATGAACCCACACTTAGAATTCTAACTCTTGGT
CTGTGGAGATAGGAGGATCAAGAATCCAGAGCCATCCTCAGCTGCTGAGT
TCAAGGCAAGCCTGGGTTACACGAGAACTTGTCCCCACCATAAATGCAAT
AAAAAAGACATACATCTCTCCTGGGTAGCCTACTCTACCCATGTCAAGTT
GTAGAGTAGGCAGGACTCTGTGTTTACTGGTATGGATAGTTCTGTTAATT
AAAAATTTGTTGGCTTGGTTCAGGGAATTTATAACTTCTTTTCTTTGGTA
ATAGGAGTCCTGGAAGTGTAAATTTGGAAATGGAGGCTGCCTAATGCTTG
TGTGGCTCAGGGTCTGCAACTATAATGGATGTCATACATTTAGGTGTAGA
CAAAACTGGGCGTTTTGTAAAGTTTCAATAGTGTAACTGAGCCAATAAAC
AGCCTCCCTTCTGACCTCCAGAACCCCAGCAAAGGATTAGGAGTTAACCC
TCTCTCCTTGTTTGCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGTTCTTCATTCTCACACAGGAAACACTCACACTTCCAAAGCCATC
CCATCTTCCTAGCCCTCCCCAAGACAGGCAGGGTCTCATGCAGACCACGT
TCTCCTCAGACTTGTGTAGCCGTGAATGACCATCAACACCTGATCCTCCT
ACCACTAACTTCTAAAGTGCTGGGATTGCAGGTGCTTGTCCTATGCCTGG
TTGTAACTCTATTTTTTAATGTGTGTGTGTGTGCGTGTGTGTGTGTGTGT
GCGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGT
GTATGCGTGCGCGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTATGTGTGT
GTGTGTGTGTGCGCGTGTGTATGTGTGTGCATGTGTGTGCGCGTGTGTGC
ATGTGCGTGTGTGTGTGCGCGCGTGTGTGTGCGTGTGTGCGCGTGTGTGC
GCGTGTGCGCGTGCGTGTGTATGCCGTGTCTGCGTGTGTGCTTCCTTGCG
TGTCTGAGTCCGTGTTGACCTTTTCCCTTTTGTGAAGAATAATGTCTACT
TCAGTGCCCCCTTTTTCCACGCTCCCATCTTGCCTGACCATCTATAGCCT
TATACTTATTCTCCCTCTCTCCACCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_e02.b1 MSMg01no086_e02.b1 CHROMAT_FILE:
MSMg01no086_e02.b1 PHD_FILE: MSMg01no086_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:55 2005
         (612 letters)



>mm_chr15_81278741_81279752
          Length = 1012

 Score = 1098 bits (568), Expect = 0.0
 Identities = 574/576 (99%)
 Strand = Plus / Minus

                                                                        
Query: 37   gattgcctttttttgggaaaggaagaacagcaatgttctattatccttacaatttatatg 96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gattgcctttttttgggaaaggaagaacagcaatgttctattatccttacaatttatatg 953

                                                                        
Query: 97   tcttaaaaaggaagacacaaaatatgaacccacacttagaattctaactcttggtctgtg 156
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 952  tcttaaaaaggaagacacaaaatatgaacccacacttagaatcctaactcttggtctgtg 893

                                                                        
Query: 157  gagataggaggatcaagaatccagagccatcctcagctgctgagttcaaggcaagcctgg 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  gagataggaggatcaagaatccagagccatcctcagctgctgagttcaaggcaagcctgg 833

                                                                        
Query: 217  gttacacgagaacttgtccccaccataaatgcaataaaaaagacatacatctctcctggg 276
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  gttacacaagaacttgtccccaccataaatgcaataaaaaagacatacatctctcctggg 773

                                                                        
Query: 277  tagcctactctacccatgtcaagttgtagagtaggcaggactctgtgtttactggtatgg 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  tagcctactctacccatgtcaagttgtagagtaggcaggactctgtgtttactggtatgg 713

                                                                        
Query: 337  atagttctgttaattaaaaatttgttggcttggttcagggaatttataacttcttttctt 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  atagttctgttaattaaaaatttgttggcttggttcagggaatttataacttcttttctt 653

                                                                        
Query: 397  tggtaataggagtcctggaagtgtaaatttggaaatggaggctgcctaatgcttgtgtgg 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  tggtaataggagtcctggaagtgtaaatttggaaatggaggctgcctaatgcttgtgtgg 593

                                                                        
Query: 457  ctcagggtctgcaactataatggatgtcatacatttaggtgtagacaaaactgggcgttt 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  ctcagggtctgcaactataatggatgtcatacatttaggtgtagacaaaactgggcgttt 533

                                                                        
Query: 517  tgtaaagtttcaatagtgtaactgagccaataaacagcctcccttctgacctccagaacc 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  tgtaaagtttcaatagtgtaactgagccaataaacagcctcccttctgacctccagaacc 473

                                                
Query: 577  ccagcaaaggattaggagttaaccctctctccttgt 612
            ||||||||||||||||||||||||||||||||||||
Sbjct: 472  ccagcaaaggattaggagttaaccctctctccttgt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)