BAC Information

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BAC

Clone NameMSMg01-086E11
Chromosome15 (Build37)
Map Location 74,307,681 - 74,464,235
singlet/doubletdoublet
Overlap geneBai1, 1700016M24Rik
Upstream geneDennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984
Downstream geneArc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086E11.T7 (MSMg01no086_e11.b1)MSMg01-086E11.TJ (MSMg01no086_e11.g1)
ACCAG305636AG305637
length785704
length of high quality
(start - end)
192 (188 - 379)386 (58 - 443)
definitionCHROMAT_FILE: MSMg01no086_e11.b1 PHD_FILE: MSMg01no086_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:57 2005CHROMAT_FILE: MSMg01no086_e11.g1 PHD_FILE: MSMg01no086_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,464,044 - 74,464,235)(74,307,681 - 74,308,066)
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTNACNCCACACG
CCCCNCCGATCATATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCAAGACAGATTCCCCTAAAGTTTCTAAGGCCAGATGTG
GCATGGCCAGACAATGACATGGCCACTGTGGCCCGGAAATCCAGAGTCAG
CTCTGGCTGGGGTGAATAATAGCTTAAAGCAGATGGGAGGGGCTCTAGCT
GGGGTTGTAGCGGGGCCAGACAGTTGGGTTATCAGGGGGAACCTTGAGGC
CCCAGATGGGCAACAGACTTCAAAATGGGGTAGTGTTAAGGCCACCAACA
CTGGGCCACACTCAGCCCCTGGCGCTGAGCATGATGGGGCACAAAATGGC
AAATGGGTCAGAGTGGCACCATAGGTTCTCCCCTCAGCTAGAAGGCAGGC
CCTCTTGCTCTTCCCCACTCATAGCCATGCTTGCGCAGCCGATCACTCTC
TAGCTCTCACCTATAGTCTGTCAACACAGCATCTGTTCCTTCCTGGTACC
ATGAGTGCATCCTGTGCCAGGTCCATGGAGCATATAGGTCTGAAGGTAAT
TAGAGCTTTCTTTTCTGGAAAGGTAGGTGTTCAGTGGTCTCTCCGACCCC
CAACCCTTGCCACAGGTTTTAATGACGAACCCATGAGATACCTTTAAGAC
ATAAGAGTTAAGGAAGCCTCCTTCTAGTTTGTTTTCCCTTATATCTTTGC
CCTATCTTGTATATTACTGGCTGTTTGGTTGATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGA
AATTCAAGAAGTTATAGAAGCAGAGTGGAACTATGGGAGAGTGACCTGGG
AGGACAGAGCAAAGGACAGTCTCAGGAGACTCAGAGGATGCAAGGGGTTC
AAGACATCTATGTGACTACAGCTCTTGTGTCATCGGTAAGAGACAGGTTT
GAAATGCTCTTTCCACAGAAACATGTCAGTCTGTAAGATTTGCCTACTGT
TCACCTCTGTCCATCCAGTCCCCAACACACAATGCACATCATCAAGACCC
GAACTTGTCAGTTAAAATAGTTAAGGAATGAGGTACAGCTCAGTGGTGTA
GGGTTCGCCCAGTGTGGACAAGGCACTTAGTATCTGAAATAAAGAAAATG
TAAACTCGGCATGGTGGCATGACAGTACTCCCAGCATCTCAAGAGCAAGA
GAATAGTAAGTTCAAAACCACCCTATATTATGAGCCTTAAAAAAATTAGT
ACTATTCTCTAAAGGTTACAAATGCTAGGTAAGTTTCAACAACCAGAAAG
TTGTGCCACGTTCTGAAAATGGAAGACTCACTATCATAAAAGTATTGCTT
TCCAACATCCCTATAAACTAACTACATAGTTTGTTAACTATATTTATAAT
TACCTATTATACCAGAATTATTTACTTATTACCTTATTTTATTACCCTGC
ATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_e11.b1 MSMg01no086_e11.b1 CHROMAT_FILE:
MSMg01no086_e11.b1 PHD_FILE: MSMg01no086_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:57 2005
         (192 letters)



>mm_chr15_74463844_74464435
          Length = 592

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccagagtcagctctggctggggtgaataatagcttaaagcagatgggaggggctcta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 392 aatccagagtcagctctggctggggtgaacaatagcttaaagcagatgggaggggctcta 333

                                                                       
Query: 61  gctggggttgtagcggggccagacagttgggttatcagggggaaccttgaggccccagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctggggttgtagcggggccagacagttgggttatcagggggaaccttgaggccccagat 273

                                                                       
Query: 121 gggcaacagacttcaaaatggggtagtgttaaggccaccaacactgggccacactcagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gggcaacagacttcaaaatggggtagtgttaaggccaccaacactgggccacactcagcc 213

                       
Query: 181 cctggcgctgag 192
           ||||||||||||
Sbjct: 212 cctggcgctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no086_e11.g1 MSMg01no086_e11.g1 CHROMAT_FILE:
MSMg01no086_e11.g1 PHD_FILE: MSMg01no086_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:57 2005
         (386 letters)



>mm_chr15_74307481_74308266
          Length = 786

 Score =  685 bits (354), Expect = 0.0
 Identities = 378/386 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagttatagaagcagagtggaactatgggagagtgacctgggaggacagagcaaaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gaagttatagaagcagagtggaactatgggagagtgacctgggaggagagagcaaaggac 260

                                                                       
Query: 61  agtctcaggagactcagaggatgcaaggggttcaagacatctatgtgactacagctcttg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agtctcaggagactcagaggatgcaaggggctcaagacatctatgtgactacagctcttg 320

                                                                       
Query: 121 tgtcatcggtaagagacaggtttgaaatgctctttccacagaaacatgtcagtctgtaag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcatcagtaagagacaggtttgaaatgctctttccacagaaacatgtcagtctgtaag 380

                                                                       
Query: 181 atttgcctactgttcacctctgtccatccagtccccaacacacaatgcacatcatcaaga 240
            ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 381 gtttgcctactgttcacctctgtctatccagtccccaacacacaacgcacatcatcaaga 440

                                                                       
Query: 241 cccgaacttgtcagttaaaatagttaaggaatgaggtacagctcagtggtgtagggttcg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagaacttgtcagttaaaatagttaaggaatgaggtacagctcagtggtgtagggttcg 500

                                                                       
Query: 301 cccagtgtggacaaggcacttagtatctgaaataaagaaaatgtaaactcggcatggtgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 cccagtgtggacaaggcacttagtatctgaaataaagaaaatgtaaactcggcatggtag 560

                                     
Query: 361 catgacagtactcccagcatctcaag 386
           ||||||||||||||||||||||||||
Sbjct: 561 catgacagtactcccagcatctcaag 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)