Query= MSMg01no086_k04.b1 MSMg01no086_k04.b1 CHROMAT_FILE:
MSMg01no086_k04.b1 PHD_FILE: MSMg01no086_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:27 2005
(609 letters)
>mm_chr15_40581167_40582175
Length = 1009
Score = 1133 bits (586), Expect = 0.0
Identities = 603/609 (99%)
Strand = Plus / Minus
Query: 1 gtcatgtaataaatattcaatagttcatacaatatgaaaagcataaaatctttcatacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gtcatgtaataaatattcaatagttcatacaatatgaaaagcataaaatctttcatacct 750
Query: 61 agtgaacatgtatacatgcatattgtaaaaataaaattaacagtatatatactctcattt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agagaacatgtatacatgcatattgtaaaaataaaattaacagtatatatactctcattt 690
Query: 121 ttaaaattgaaacagatgtgataaaaattgcaagatattttattaaagatgttactgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttaaaattgaaacagatgtgataaaaattgcaagatattttattaaagatgttactgaat 630
Query: 181 aatttaaaaaagaatagtaagttggctccagttatatattaaattttgatagttgaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aatttaaaaaagaatagtaagttggctccagttatatattaaattttgatagttgaatta 570
Query: 241 aaaccttttttatgctatcatttgaaagataaccaccactaaacacagatttatacttag 300
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaccttgctcatgctatcatttgaaagataaccaccactaaacacagatttatacttag 510
Query: 301 taaacctcacaccaagttatatgctgtcaatcaaaaatagactcagtttttaagtgggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taaacctcacaccaagttatatgctgtcaatcaaaaatagactcagtttttaagtgggca 450
Query: 361 tttcacttttatttctaggtttatgaaaagtgtatattgaagtggcatttatattcaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttcacttttatttctaggtttatgaaaagtgtatattgaagtggcatttatattcaaac 390
Query: 421 aagcctaaatataaagttaaagaaatttttagctcatttgttccaaaggcatgagaatcc 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 389 aagcctaaatataaagttaaagaaatttttagctcatatgttccaaaggcatgagaatcc 330
Query: 481 agtgctaatatttacaataagatacaagtcaattacatggtcagcttgcattccttccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtgctaatatttacaataagatacaagtcaattacatggtcagcttgcattccttccaa 270
Query: 541 aataanaatcaggtttatattgtttactatattttcaaatgtgaaattaccagccacttc 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aataaaaatcaggtttatattgtttactatattttcaaatgtgaaattaccagccacttc 210
Query: 601 ttttacacc 609
|||||||||
Sbjct: 209 ttttacacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_k04.g1 MSMg01no086_k04.g1 CHROMAT_FILE:
MSMg01no086_k04.g1 PHD_FILE: MSMg01no086_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:27 2005
(574 letters)
>mm_chr15_40402907_40403880
Length = 974
Score = 1046 bits (541), Expect = 0.0
Identities = 570/589 (96%), Gaps = 15/589 (2%)
Strand = Plus / Plus
Query: 1 catctgtcaatcaaatttctaacttggatgaacacattcagtaacatgatagacctttaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctgtcaatcaaatttctatcttggatgaacacattcagtaacatgatagacctttaa 260
Query: 61 ttttgcttcagtcatttaagcttagaaacaaaactgtgatgagccataggcactatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgcttcagtcatttaagcttagaaacaaaactgtgatgagccataggcactatgatg 320
Query: 121 tactgtatgtatatagctgtactttttctggaggcaaaacctgccatattgtcattttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgtatgtatatagctgtactttttctggaggcaaaacctgccatattgtcattttgt 380
Query: 181 tggattgtttactaaccctgtaaaaaatggaatcataaaagattaacatctgtcatactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggattgtttactaaccctgtaaaaaatggaatcataaaagattaacatctgtcatactt 440
Query: 241 gtagtttattttattaaagttgttaaatgaaaataatccatcaaataactcctgaataca 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 441 gtagtttattttattaaagttgttaaatgaaaataatccatccaataactcctgaatata 500
Query: 301 agtacatatacttagttcaatatttcttttttgaaatttattttattttattttatttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacatatacttagttcaatatttcttttttgaaatttattttattttattttatttta 560
Query: 361 ttttattttattt---------------atgtgtatgtgtgtcagtatgtatgtatgacc 405
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ttttattttattttattttattttatttatgtgtatgtgtgtcagtatgtatgtatgacc 620
Query: 406 atttatgaaggtacctgtagaggccagtagagggagtcggatcagctggagctagtaaaa 465
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 atttatgaaggtacctgtagaggccagtagagggagtcagatcagctggagctagtaaaa 680
Query: 466 agggcggtagtcagcttctctctccttcccatatgggtccagggagcagagctctagtcc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggcggtagtcagcttctctctccttcccatatgggtccagggagcagagctctagtcc 740
Query: 526 tctacaggagctatctctccacccattaaacattgcttacatgcactaa 574
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctacaggagctatctctccacccattaaacattgcttacatgcactaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
