BAC Information

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BAC

Clone NameMSMg01-086M13
Chromosome15 (Build37)
Map Location 34,024,860 - 34,025,090
singlet/doubletsinglet
Overlap geneMtdh
Upstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463
Downstream geneLaptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086M13.T7 (MSMg01no086_m13.b1)MSMg01-086M13.TJ (MSMg01no086_m13.g1)
ACCAG306001AG306002
length687788
length of high quality
(start - end)
232 (90 - 321)47 (119 - 165)
definitionCHROMAT_FILE: MSMg01no086_m13.b1 PHD_FILE: MSMg01no086_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:39 2005CHROMAT_FILE: MSMg01no086_m13.g1 PHD_FILE: MSMg01no086_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCCAATGTTTACCCAGCTAGCCTTGAACTTGGAGCT
CTACCAACCTCCCTGTCTCCTGAGTGCTTGGACTACAGGTATGCACTGGG
CTAGTAGTTTTTGTGTTTTATCAGAAAGTAACAAAATATACTGTCTCTTG
AAAAGCAAACCCTACAGTATTTTTAGCCCTAGAGAGAATATGTTTACGTA
TTAGTTGTAATGTATTAACTTTCTGAAAGAATTTATGTCTAGAGCATTGT
ATCTGTTGGATGCATGTCCAGTAGGATTCGACCATCTGGCTTTAACATTT
GTGAGATTGCTAGTATAAAATTGTTTATACGTGCTCGACTATGAGATTAG
GGCACATGGGCATCATGCTTTTAAACACCACAGGATATTAAAAGTGAGGA
AACTTTCTTGATCAGGTATGTTTTCACATGCTCCCATTTGGTATATTCTA
ACAAGAGCCCTAGAAGCTAGGCACACAGTTTTTCTCATACTTACCAATCA
TGAAGTTGGGAGTGAAATCAATAAAAATGCTTACAATTCTTTGATTATGT
TTAACATGATAGCCCAGTGCTTCAAGGCTCTTGCTGCTACTCCATTGATC
TTTTGTTCTAGTCTCCACAACCTATTTATTTTATTATATATACCCTCTCC
TCACACTTGACTTCCTCTCAATTTTCTTTTTTTCTTC
TGCTGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCTGGCATTCACTGGTCCTAAGGATTGGAACCAGGGGATTCAC
AGTGTGGAGGGTGGAGCCGGAAGAAAAAGAGAGAAAGGGCATGTGCACAC
AGAGAGAAGAGAAGACTAAGGAGGAGGGGAGAGAGGTAGAGGAGGTATGT
CAGATATTCCTTCTCCTCCCCTCTTTTTTTCTCCTTTTCTCACTTCTCTT
TTTTTCCCTCCTCCTTCCTTCTCTCTTTTTTCTCTTTCTTTTTCTTTTCT
TTTTCTTTCTTCCTTCTTTTTTTTTTTTTTTCCTTTCCTTTCTTTCTTTT
TTTTTCCCTTTTCTTTCTCTCCCTTCTTCTTTTCTTTTCTCCTCTCTTCT
CTCTTTCTCTTCTTCTCTTCTCTCCCCTCTTTCTCCTTCTCCTTCTTCTC
TTCTCTTCCCTCTCTTCCTCTCCTCTTTTCTCTTCTCTCCTCCTTTTTTC
TTCTTCTTTCTCTCTTTCTCTTTCTTCTCCCCTTTCTTCCCTTCCTTCTT
CTCTTTTCCTTTTCTTCCTTTCCTCCTCCCTTTCTTCTTATTTTTCTTCT
TCTTTTCTCTCTCTTTCTTCTCCTTATTCTTTTCTCCTCTCTTCCTTCTC
TTCCTCTTTTTCTCTTTCCCTTCTCCATTCCTCTCTTCCCTCTTCTTCTC
CTCTTTTTTTCTCCTCTCCTTCTATCTTTCTCTTTTCTTCTCTCCCCTTC
TCTTTTCTCTTCTTCCTCCTTCCTCTCCCTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_m13.b1 MSMg01no086_m13.b1 CHROMAT_FILE:
MSMg01no086_m13.b1 PHD_FILE: MSMg01no086_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:39 2005
         (232 letters)



>mm_chr15_34024660_34025291
          Length = 632

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgcactgggctagtagtttttgtgttttatcagaaagtaacaaaatatactgtctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tatgcactgggctagtagtttttgtgttttatcagaaagtaacaaaatatactgtttctt 260

                                                                       
Query: 61  gaaaagcaaaccctacagtatttttagccctagagagaatatgtttacgtattagttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaagcaaaccctacagtatttttagccctagagagaatatgtttacgtattagttgta 320

                                                                       
Query: 121 atgtattaactttctgaaagaatttatgtctagagcattgtatctgttggatgcatgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtattaactttctgaaagaatttatgtctagagcattgtatctgttggatgcatgtcc 380

                                                              
Query: 181 agtaggattcgaccatctggctttaacatttgtgagattgctagtataaaa 231
           ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 381 agtaggattcgaccaccaggctttaacatttgtgagattgctagtataaaa 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)