BAC Information

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BAC

Clone NameMSMg01-086N03
Chromosome15 (Build37)
Map Location 88,990,286 - 88,990,581
singlet/doubletsinglet
Overlap genePlxnb2
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11
Downstream geneLOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N03.T7 (MSMg01no086_n03.b1)MSMg01-086N03.TJ (MSMg01no086_n03.g1)
ACCAG306028AG306029
length785766
length of high quality
(start - end)
296 (122 - 417)345 (129 - 473)
definitionCHROMAT_FILE: MSMg01no086_n03.b1 PHD_FILE: MSMg01no086_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005CHROMAT_FILE: MSMg01no086_n03.g1 PHD_FILE: MSMg01no086_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTTCCCCNNNNCCCNCTCCTTTCCCTTCCCTTNCCCCCTTTTAAC
CCNNNGGATCTAAATTTGCGGCGCTATACGACTCCTATATCCAGAGGTCC
GCGGAATTCCAGGTGGTGCTGTCCCCCTCCCCCGGCAGGTGGAGCCACAG
AGTATCCCTGGATCTTCTAGGCCACCCCTTAGGGCCAGAAACTGCAGGAG
GGCCCGGGTTAAGAGCAGCAGGAGTAGGTGGCCAGGGGTCGCCTCACCCA
GGCTCGCATCCCCTTCTCAGACCTGATGATCGAGATGGAGGACCAGACGA
ATGACGTGCATGAGGCAGGCATCCCCACGCTGGACTACAAGACCTACACC
GACCGCGTATTCTTCCTGCCGTCCAAGGATGGTGACAAGGATGTCATGAT
CACCGGCAAGCTAGACATTTTTGAGTCACGCCGGCCCATTGTGGAGCAAG
CCCTCTACCAGCTCTCCAACCTGCTTAATAGCAAGTACTTCCTCATCTAT
GTGAGCTGAGGGTGGTCAGGCGCGGTCTAGGCGGATACAGGGCAGGGGGG
CAGAAAGATAATGTTTGGGGTGGGGTAAGGTTGTTCCTTTATATCCTCCT
GTGGGCACTCCTCTGCTTGCCCCGCTGTTCTTTCTTCACTCCTGCCTAAC
CTTTGCGCCTTCCCCTCACCGGATCCATGGTTTTCCCCTGTATCCGCCGT
TTCACTGCTTTCTCTGCTCCCGCCACTTCGCCATTATCTATTCTGTTTCC
CGTTCGTCCGTTTTCTTTTGCTCTTTATTTCCCGC
NNNNNNTTTTCCCTTTTNCCCCTTNNCCCCCCCCCCCCTTCNCCGTTCTC
NNNNCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAACAAACATGTCAGCATT
AAGAGGAGCTCAGACTTGGTGCTGTGACAGTGGGACACTGATGGCGAGAC
TTCACGTAACAAAAGTGTGAAAGGAGAGAGTGGAACTGAGAAGGCCACGG
CAGAGGTGCTGTGCTCTACAGTGTTTGCCTGCAGTGTTTCCCCGGCCCTA
GCCATCAAGGTCTACAGAAGCTATGGTAGAAGGGAACCAAACTACATCTT
AAACTGGAAACAGAACTTGACAGTGATGTCCTTATGGTGCTGGTTTTCTT
AATGGGCTATTAGAGAGGTTTGCACCAAAGTTCCAGGAAGCCACTAAGTG
TAAAGCAGGGTTAGATTTCCTGGAAGAAGGAAGGCCTTGAGAAATCATTG
TATGAAATACTGAATACTAATTCCATAATGAAGAACTCAGTATGTCCAAT
AAGGAAAGCACACTTAGAGCAGAGCTGCCTCACGCTGTTAACCGCACAGC
TAAACGAGCATGCATGCTAAGGCTGTTGCAGTCCAAATTATCCCATTGTA
AGATCTCATATGCCAGACTTAGACCGCAGAATTGGATGTTCAACCTAACT
GGGCTTCCCTGCTTCCTTGCCTCGATCTTTTTTTGCTGGGTCTCCCTATC
TCCCTTTTTGAATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n03.b1 MSMg01no086_n03.b1 CHROMAT_FILE:
MSMg01no086_n03.b1 PHD_FILE: MSMg01no086_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:42 2005
         (296 letters)



>mm_chr15_88990086_88990781
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccctcccccggcaggtggagccacagagtatccctggatcttctaggccacccctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccccctcccccggcaggtggagccacagagtatccctggatcttctaggccacccctta 437

                                                                       
Query: 61  gggccagaaactgcaggagggcccgggttaagagcagcaggagtaggtggccaggggtcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggccagaaactgcaggagggcccgggttaagagcagcaggagtaggtggccaggggtcg 377

                                                                       
Query: 121 cctcacccaggctcgcatccccttctcagacctgatgatcgagatggaggaccagacgaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cctcacccaggcttgcatccccttctcagacctgatgatcgagatggaggaccagacgaa 317

                                                                       
Query: 181 tgacgtgcatgaggcaggcatccccacgctggactacaagacctacaccgaccgcgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgacgtgcatgaggcaggcatccccacgctggactacaagacctacaccgaccgcgtatt 257

                                                                   
Query: 241 cttcctgccgtccaaggatggtgacaaggatgtcatgatcaccggcaagctagaca 296
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 256 cttcctgccatccaaggatggtgacaaggatgtgatgatcaccggcaagctagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)