BAC Information

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BAC

Clone NameMSMg01-086N04
Chromosome15 (Build37)
Map Location 64,454,135 - 64,571,185
singlet/doubletdoublet
Overlap geneAdcy8
Upstream geneEG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N04.T7 (MSMg01no086_n04.b1)MSMg01-086N04.TJ (MSMg01no086_n04.g1)
ACCAG306030AG306031
length666859
length of high quality
(start - end)
384 (9 - 392)161 (135 - 295)
definitionCHROMAT_FILE: MSMg01no086_n04.b1 PHD_FILE: MSMg01no086_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005CHROMAT_FILE: MSMg01no086_n04.g1 PHD_FILE: MSMg01no086_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,454,135 - 64,454,515)(64,571,025 - 64,571,185)
sequence
ATGACTCCGCGGAATTCACCCCCTTTTGCCATCTTTACCAGGAGACGCAG
CTCAGATCCTGCATTTTGTTGATCTCTAAGGTGCTGACCAGAGGCGTTCT
GTGTTGTTATTGCTAGAGGTGATGTTCCCATCTGTGCTTCAGCCCCTGTG
TCCTCTCTTGCCTCTGATCATGAGTCAGTCTCCTTTGGCTGGGGACAGAG
AGCACATGACTGGTTCTGGCCTCATTCTGCTATAAGTGAGCAGCCATTTC
CAGGCTCATCCTGCTGCCCGATGACTCACTGAGACTGGGGGCCTCAGTTG
GCTCCCTCACAGACATCTGTATCCAATGCACAGATGTCCCTTCTGCTTCC
AGAGAAGTCTGAGCTTTGATCTTTGGGCCATCTTGCCGTCATGTAGGCTA
ACCTAGGGTAAACAAAGAATCCCCATTCTCCTCAAACTTGTGTCCTTATT
TCAGTCCAAGGCAAACTGCTTCCTGGGATCCCACAGAGCCTGAAGCAAAG
TCCATGCTCCCCTCACATCATCCATACCCGTTTGCCCTTGAAGGTTTTAA
AAATATAATGCCCCCAAAGCGCTCTCTTGGTCCTTCATTTTACCGGGTCA
CCTTTTTTTACCCTCGCCCCTTCACCATCAACCCTACTTGCCGGCTAAAA
CGCACCCTGGGAAACG
CCCTCCCTTCCTTTTTNTTCTCCTTCTTTTTTCCCTNNCNNNNCNNCCCT
ACTCCNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATTTTCAGACTGA
CAGGAGTTTGCTTTATTCATTATTTCCCAGGTCAGCGTGTTGTCTGAGAG
AAGAAAGCCTTGAGTATCCAGAAATAGAGAACTTCTCCATGGACAACCCC
TATTCCTTAGAACTGATGAAAGAATAATCGATGAAAGAATAATCTCAAGT
CTGTGGAGTTTAATTGCATAATACCTTATCTTGGGTACTCTTCTATTCTT
ACTTTTTTCCCTATTCTTTCCTCTTCTTCCTCATTTTCTATTTTTATTAT
TCCTATTTCCTTCTTCTTTCCACCATTTACCCATTATAATTTTCCCCATT
TTCCCCTACCTCTTTCCCCCCCTTTCCCCTTTCCATATATTTTACCCTTT
TTTCCTCACCCCTTACTCCTTTCTTTTTTTCTTCTGTGTCCTTTTTTTCT
CTTATCATATTTTCTTTCCTACCCACTCTTTCCTCCCTTTCTTATCCCCT
TTTCTCTTACCCCCCTTTTCTTCCTTTCCTCCTCTCTATCACCACCATCC
CTCTTATCTATTCCCCCCTGCCTATTTTTCTTCCTCCTTATCCCACATTT
TTATCTTATCTCCCCATTTCTATTCTCCCCCCTCTCTTTTTCATTATTCT
GTTCTTTCCACTACGCTTTGTTATATTAATATAGTCTTCCTGTTTTTTTA
TTTTTTTGCCCCGCTTCCTATACCCTGTTTGTATTTCATTATATTCCCCC
TTGTAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n04.b1 MSMg01no086_n04.b1 CHROMAT_FILE:
MSMg01no086_n04.b1 PHD_FILE: MSMg01no086_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:42 2005
         (384 letters)



>mm_chr15_64453932_64454715
          Length = 784

 Score =  683 bits (353), Expect = 0.0
 Identities = 374/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcacccccttttgccatctttaccaggagacgcagctcagatcctgcattttgttg 63
           ||||||| ||||||| | |||||||||||||||| | |||||||||||||| ||||||||
Sbjct: 204 gaattcatcccctttgggcatctttaccaggagatgtagctcagatcctgcgttttgttg 263

                                                                       
Query: 64  atctctaaggtgctgaccagaggcgttctgtgttgttattgctagaggtgatgttcccat 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctctaaggtgctgagcagaggcgttctgtgttgttattgctagaggtgatgttcccat 323

                                                                       
Query: 124 ctgtgcttcagcccctgtgtcctctcttgcctctgatcatgagtcagtctcctttggctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtgcttcagcccctgtgtcctctcttgcctctgatcatgagtcagtctcctttggctg 383

                                                                       
Query: 184 gggacagagagcacatgactggttctggcctcattctgctataagtgagcagccatttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggacagagagcacatgactggttctggcctcattctgctataagtgagcagccatttcc 443

                                                                       
Query: 244 aggctcatcctgctgcccgatgactcactgagactgggggcctcagttggctccctcaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggctcatcctgctgcccgatgactcactgagactgggggcctcagttggctccctcaca 503

                                                                       
Query: 304 gacatctgtatccaatgcacagatgtcccttctgcttccagagaagtctgagctttgatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacatctgtatccaatgcacagatgtcccttctgcttccagagaagtctgagctttgatc 563

                                
Query: 364 tttgggccatcttgccgtcat 384
           |||||||||||||||||||||
Sbjct: 564 tttgggccatcttgccgtcat 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no086_n04.g1 MSMg01no086_n04.g1 CHROMAT_FILE:
MSMg01no086_n04.g1 PHD_FILE: MSMg01no086_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:42 2005
         (161 letters)



>mm_chr15_64570825_64571385
          Length = 561

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagattttcagactgacaggagtttgctttattcattatttcccaggtcagcgtgttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 aagattttcagactgacaggagtttgctttattcattatttcccaggtcagtgtgttgtc 302

                                                                       
Query: 61  tgagagaagaaagccttgagtatccagaaatagagaacttctccatggacaacccctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagagaagaaagccttgagtatccagaaatagagaacttctccatggacaacccctatt 242

                                                    
Query: 121 ccttagaactgatgaaagaataatcgatgaaagaataatct 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccttagaactgatgaaagaataatcgatgaaagaataatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)