BAC Information

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BAC

Clone NameMSMg01-086P18
Chromosome15 (Build37)
Map Location 45,759,802 - 45,760,123
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086P18.T7 (MSMg01no086_p18.b1)MSMg01-086P18.TJ (MSMg01no086_p18.g1)
ACCAG306144AG306145
length670662
length of high quality
(start - end)
322 (37 - 358)411 (54 - 464)
definitionCHROMAT_FILE: MSMg01no086_p18.b1 PHD_FILE: MSMg01no086_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:56 2005CHROMAT_FILE: MSMg01no086_p18.g1 PHD_FILE: MSMg01no086_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTTTATTCTTGTCCCATACCACAATATAAATTTTT
CAGATTTGTGTTGATTCCAGAAGAATTGCTGTAAACGCCTTGTTCCTATT
GATATTTGTCATTAATGTTTGTCAAATTATAGGGCAGATATTCTGTTCAT
TTTCTGGTCAGAACCCATCCTCAACTATCATATGGTCATCTTTGCAAGTA
CCACTTCAGATCAATATGACTCAGGTCACATTTTATAAACCTGGAGACTA
GGATCACTCTTCTTATCAGGTTGCAGGATGACTGCGAATATATAATATCA
AGGATCTTAATTAAAACTGAACCAAAAATTTACAATTGCGAGCCATCTTA
TTATTCTAATATCATATATATCACGGGAATTACATTTTCTTTCTTTCTAC
ACGAGTAGGAGGCTCTCTTTTGTGGCTTATGGAGCGGAGGTCTACCTACT
CTGCGATGGAGGTAAGCACGATGCGGTGGTCGTTAGCGCTGAATTGCTGA
AGGGTTGCCAGCCTCCTGATAACGCTGCCGGATCTAGCTGATCCACTGGT
ATTGCTTGCCCACATATCCTCCCGTGCTTGTTGGCGATCACTCTTTCTTA
ACGCTTGCCGCCCACGCCCCGTGACGTCCCGCCTGCCCTCTGCTACGGCT
TGACCTGGACTGGGCCGCGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTGTTTAGCTCTGTACCACATTTTTTATAAGGTTATTTGGTTCTCT
GGACTCTAGCTTCTTGAGTTCTGTGCATATATTGGGTATTACCCCTCTAT
CAGATGTAAGATTGGTAATGATATTTTCCAAATCTGTTGTTTGTCTTTTT
GTCTTATGGACAGTCTTCTTTGCCTTACAGAAATTTTGCAATTTTATGAG
GTCCCATTTGATGATTCTTGATCTTACAGCACAATCCATTGGTGTTCTGT
TTAGGATTTTTTTCACCTGTGCCCATGTGTCCGAGGCTCTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCTCTTTGATCC
ACTTGGATCAAGCTTTGTACGATGAGATAAGAATGAATTGATTTTCATTC
TTCTCAATGGTGACCACCAGCTGAACCAGCACCATTTGTTTAATTTCAGT
ATTTCAGCTAGCAGGGGACAATTTAGCTTTCTTCTATCAAGAATCACAAG
AAAAAGTTGGGTTACTTTGTTTCCATAATTTGATTTCTTCTTTCCAGGTT
CTTTGTACTAGACTGTAAATTTTGTTTTATTNAAAAAAGAGCCTAGTCTT
TACTAATTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_p18.b1 MSMg01no086_p18.b1 CHROMAT_FILE:
MSMg01no086_p18.b1 PHD_FILE: MSMg01no086_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:56 2005
         (322 letters)



>mm_chr15_45759602_45760323
          Length = 722

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatataaatttttcagatttgtgttgattccagaagaattgctgtaaacgccttgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caatataaatttttcagatttgtgttgattccagaagaattgctgtaaatgccttgttcc 260

                                                                       
Query: 61  tattgatatttgtcattaatgtttgtcaaattatagggcagatattctgttcattttctg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgttatttgtcattaatgtttgtcaaattatagggcagatattctgttcattttctg 320

                                                                       
Query: 121 gtcagaacccatcctcaactatcatatggtcatctttgcaagtaccacttcagatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagaacccatcctcaactatcatatggtcatctttgcaagtaccacttcagatcaata 380

                                                                       
Query: 181 tgactcaggtcacattttataaacctggagactaggatcactcttcttatcaggttgcag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgactcaggtcacattttataaacctggagactagcatcactcttcttatcaggttgcag 440

                                                                       
Query: 241 gatgactgcgaatatataatatcaaggatcttaattaaaactgaaccaaaaatttacaat 300
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tatgactgcgaatatataatatcaagcatcttaattaaaactgaaccaaaaatttacaat 500

                                 
Query: 301 tgcgagccatcttattattcta 322
           ||| ||||||||||||||||||
Sbjct: 501 tgcaagccatcttattattcta 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)