BAC Information

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BAC

Clone NameMSMg01-087C02
Chromosome15 (Build37)
Map Location 42,455,643 - 42,455,991
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087C02.T7 (MSMg01no087_c02.b1)MSMg01-087C02.TJ (MSMg01no087_c02.g1)
ACCAG306248AG306249
length716690
length of high quality
(start - end)
237 (51 - 287)353 (77 - 429)
definitionCHROMAT_FILE: MSMg01no087_c02.b1 PHD_FILE: MSMg01no087_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:08 2005CHROMAT_FILE: MSMg01no087_c02.g1 PHD_FILE: MSMg01no087_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATCCCTAATCATCACGGAAATGCAAATCAAAACAACCCTG
AGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAACCAGTCTGGCAGTT
CCTCAAAAAATCTGGACATAAGTACTATCTAGAGGGATCCCTGCAAAAAA
CTTCCTCCTGGGGCATGGTATACCCGAAAAATGGTTTCCCCCCGGGCTAG
GAAAGGAAAAATGGGTCTACACAGATGGGTTCTAAAGAGAGCCCTTTTAT
TTTGTGATATTACCCTAATAACTCGGGGTCACAAACCCCCATAAGGCCCT
CCCCCCAATATAAGGAAAGGGGGGCTTTTACACAAAAAGCCGGGTTGCTC
CTCTTTTTCCACCCTTGGGGGGTCCTTTTACACCCATATTTTTTTCATTC
CATGAACACCCACATCTTTTCCCCCTTTTTTTTTTTTTTCCATTCACTCG
GGTGCGCCGCCCTCCCACCCCCGTCCCTTTTTTTCCTCTGCGGGGGCGGG
TGGAGTTCCTTTCCCT
CTATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCCTACCGTGTTTAGATTTA
GGCGATGGAAGAACATCTAAGTAAAGATGTTCCATAAACAGAAAGAAATC
TGTAACAAGAGAGTCTGAAAGGTCAGGGCAAGAGAGAAAGATCTGGAAAC
TCTCTGCACAGTGCCGAGTGGTAAACAGAACCCAGGGCTCAAGCATTAGA
CTTGCTTATGGGCTGTGACCTACAAACTACAGAAGATCATTTTTAAAACT
CTACTTTAGATACATTGATTTAAAAGATGTATTTTAAAATTCTCTCTGTG
GGTTAATAGAGCAACATGTTTTATTTACCTCTCTAGAACTAAAAGAAACT
TCAGATTTCTGGCTAATTACTTCAGCTTATAGACAGACAGAAACTAAAGG
GGTTAACTGAGTTGAACAAATACATTTCCTTATTTATGCATCCAACACAT
ACAACTGCTTATATGGACACAACTGCCCATTTCTGATGATATTTAAATCC
CCAAAGACGTAAATTGGCGTTTAGAATTCATCTTTTCTTTCGCACCTGTT
ACTTTGAAATTTACCTTCGCGTTATCTTATATGATTTATGCTTCTAAACA
ACTGATCTGTATCCATGCCTTAAATTTTTCTATCCCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_c02.g1 MSMg01no087_c02.g1 CHROMAT_FILE:
MSMg01no087_c02.g1 PHD_FILE: MSMg01no087_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:08 2005
         (353 letters)



>mm_chr15_42455443_42456195
          Length = 753

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttccctaccgtgtttagatttaggcgatggaagaacatctaagtaaagatgttccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttccctaccgtgtttagatttaggcgatggaagaacatctaagtaaagatgttccata 260

                                                                       
Query: 61  aacagaaagaaatctgtaacaagagagtctgaaaggtcagggcaagagagaaagatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagaaagaaatctgtaacaagagagtctgaaaggtcagggcaagagagaaagatctgg 320

                                                                       
Query: 121 aaactctctgcacagtgccgagtggtaaacagaacccagggctcaagcattagacttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactctctgcacagtgccgagtggtaaacagaacccagggctcaagcattagacttgct 380

                                                                       
Query: 181 tatgggctgtgacctacaaactacagaagatcatttttaaaactctactttagatacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgggctgtgacctacaaactacagaagatcatttttaaaactctactttagatacatt 440

                                                                       
Query: 241 gatttaaaagatgtattttaaaattctctctgtgggttaatagagcaacatgttttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttaaaagatgtattttaaaattctctctgtgggttaatagagcaacatgttttattt 500

                                                            
Query: 301 acctctctagaactaaaagaaacttcagatttctggctaattacttcag 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctctctagaactaaaagaaacttcagatttctggctaattacttcag 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)