BAC Information

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BAC

Clone NameMSMg01-087F16
Chromosome15 (Build37)
Map Location 90,677,744 - 90,677,855
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682
Downstream geneTcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F16.T7 (MSMg01no087_f16.b1)MSMg01-087F16.TJ (MSMg01no087_f16.g1)
ACCAG306408AG306409
length833838
length of high quality
(start - end)
112 (161 - 272)46 (128 - 173)
definitionCHROMAT_FILE: MSMg01no087_f16.b1 PHD_FILE: MSMg01no087_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:27 2005CHROMAT_FILE: MSMg01no087_f16.g1 PHD_FILE: MSMg01no087_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCCTTTTTTCTTTTTTTCCTTTCTTTCCTCTTCCCCCTTTCTTCCTT
GTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTTAAACTGTGCATCCTTTATTTTTGGTCATAAAATGTGA
CAACTAGGTTGGAGCTGAGGAACATGGGAATTTTGCATTTCAGTTGAATC
TGAGCTGTGAATGGTATCTTTTACAAGTAGTGATTCTCAGGGAACACTTC
CTTAATAACTACTTTTGAGCAGAGATTCTTAGTCTCTAAAACCACAACTA
CAATAACAACAACAACTACAAGAACCCCATCCAGGTCTTTCCATGTCTTT
ATTTATGTATCTAATAGAGGCTCGCTTCAGTTATTTAGCAATAATGACTC
AGGGCTATTACAATGTGTATGCAGGCGGAAGGATGCCCGCTCCTTGTATC
CTATATCCTTGCCCTTATCCCCCCCCCCCCCGTATGTATTCCACTTTCTT
ACTTTTCTTCCTTTCATTACTCTATTAAACCATTTCCCCTTATTTCCACA
TATTCATTACCTCCCTTCCTCTTTTTCCCCTTTTACCCTTCCCTTTTCTC
GTTTTCCCTCTTTCCCCTTCATTATTTTTCTTCTTTTTTGTAACTTTCTC
ACCCATTCCTCTTTTCAACACTCCTCCCCTTTTTTCACTTATCCATTTTA
CCCTTTCCTTTCTTCTTCTTTCCCCTTCTTTCCTTCATTTTTAACCATCC
GTCTAATCGGCTCCTCTTTTTCCCCCCTCTATTTTATTATCCTTTTCCTT
TCCGCTTCCCTTTTTTCTTTCCCTTTCTTCTCA
CTTTTTTTTTCTCTCCTTCTTTCCCTTTCTCTTTTTTCCNTACCNNTCTC
CAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTAGCAATTAGTCAAGGAAG
AAGAATGAAACACAAAACAATTCATGGACCCCCAGCCCTGCGATTGCCTC
CCACATGCTAAAATTATCTATAGAGAATATCTTAATGTGCACATTAATTA
TTGGGTCGATAATAGAACAGTAAGCTTTGTAGATAAATAAAACTGATGTA
TAAATTCAACCAAACTCTATAAGTCAGCTTAGAAAGTGTAACAGCTAACA
AAACAATAGGGCATTTAAAGCAGCATTACCACATACAAAAGCTGCGCTGA
AGCGATGGCTCAGCAGTTATTATTTCTGACTGCTCCTCCGAAGGTCCTGA
TTTCAAATCCCAGTATCAACACCCCCGTCTCACAAAAAAAAAGAACATGA
GATCGGATGGCCTCTTCTGAAGTGTCTGAATACCGCCCCAGCGACACTTA
CTACCCCTCTTTTCCTAATATCTTTTCACTAATCTTCCGATAATCTAGCA
TCTATTACCCATTTTACCTTCCATTCTTCAACATAAATACCTATATGCCA
TTGCTAAAAGTTCCTCTCTTACCCACTTTATTCCATTGACCAATCCAACC
TAAAGCCTTGGGTATAATCTGGCCCCCCCAAGCAATATCCAAATCCCCCT
CCAAATTCTATTCCCCGGACCCTTACTGTTTTCCCCCATTTTTCCCTTAC
CTTTTTGCAATACGTTTGAATATCACTTTCTTTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f16.b1 MSMg01no087_f16.b1 CHROMAT_FILE:
MSMg01no087_f16.b1 PHD_FILE: MSMg01no087_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:27 2005
         (112 letters)



>mm_chr15_90677544_90678055
          Length = 512

 Score =  178 bits (92), Expect = 9e-50
 Identities = 107/112 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagctgaggaacatgggaattttgcatttcagttgaatctgagctgtgaatggtatctt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggagctgaggaacatgggaagtttgcatttcagttgaatctgagctgtgaatggtatctt 253

                                                               
Query: 61  ttacaagtagtgattctcagggaacacttccttaataactacttttgagcag 112
           ||| ||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 252 ttaaaagtagtgattctcagggaacacttccttaagaaataattttgagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 512
Length adjustment: 8
Effective length of query: 104
Effective length of database: 504
Effective search space:    52416
Effective search space used:    52416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)