BAC Information

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BAC

Clone NameMSMg01-088C03
Chromosome15 (Build37)
Map Location 102,954,358 - 102,954,540
singlet/doubletsinglet
Overlap geneLOC432989
Upstream geneSpryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Downstream geneSmug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088C03.T7 (MSMg01no088_c03.b1)MSMg01-088C03.TJ (MSMg01no088_c03.g1)
ACCAG306970AG306971
length713772
length of high quality
(start - end)
181 (129 - 309)188 (197 - 384)
definitionCHROMAT_FILE: MSMg01no088_c03.b1 PHD_FILE: MSMg01no088_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:30 2005CHROMAT_FILE: MSMg01no088_c03.g1 PHD_FILE: MSMg01no088_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGAGACGGGGCAAGCACTTGAAGCTGAATCAGAAGACTATGG
GATCCCAGTTGACAGCTGCTCCCAGAGTTCTTTCCTCCTTGTTTGTAGAG
AGGAGATAAACGCATGCGATAGTCCTGATTTTATTAAAAAAGCGCTCTCT
CAGTGTGTGTGCGTTTGTCTGTATGAAAATTACTCTACAGGAAGCTACTT
GGGCCTGAGATTTAATATATACAAATACTGTCAGCTCCTCCCTTCACGTG
ACAGAGCAAGTATTAATATATCTAGGACAGCAGCCCAACATTAGGTCTGC
CACCATCCTTTTTTTTCCATACCCCTCTGTTTCCTCCTAATCAATCTCCT
ATGATAATTTATAGAACCCATGGTCCCTTAACAATGTGTGTAGAGGTAGT
AAGTTCCAGTGCGTCTCCTATATATTTATGGTAAGAGTAAACGCCTCCTT
TGCCGCTATCTACTATTCCCTTCTTACCTGTATTCGCTATCTCAGTCCTC
TCTCGAACATTACCCCTTGTTAAGTAATTTAGGTTATGTATCTCCACTCC
CTTGCACCAGCCCTGTTCATCCATATTTCTCATATCACTCTCCTTTCTAT
TCAACGTACTTTTCCGTAAAGCAACAAATCTCGGTGTTCACCGGATTATT
CCTATTATCACTT
GGGGGGGCGGGGGGGNGNGGGGGGTGTGGGGGGGGGGCCNCCCAAAANNN
NNAAACATTAATTAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAAGGCA
AGGCGGGGGAGATCTGCAAGAGGACTCTGTTTATGCCCTCCAAACAAACA
AGAGAAATTCATCTTTAATATTTTAAAGGGGGCAAATTAACATTCTGTGA
TTTCTTTTATTCTTTCTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTGAGACTATCAGCAGTTCCAAGAGGATGAAAA
CGGTTGAGTATTTTCTAGTGACACATCCAGGTTATTAAAGTCATTTTAGA
CCAATTCATTACTTTTACTGACAAGAGATTTACGAAAACAATCAACTAAG
GATTTGGATATTCTTTTGCATACATTACACCTGCCTGCTGAGATTAGGAA
AGGACATAAACTTAACTTATACCCATGGTACACAACGGAGAGATACCCAA
AGGGCTAAAATCGGTTATAAGACCCCCTGCTTTTACGCTGGGACTTCTCA
AGTTTGCCTGGCTGCATTAAAACTATCTCAGATGACATGTATATGCCCTG
AATTGAAAAAACATATATAAACGCCAATTAATGAGGAGGAAACAGGCAGG
AAGAAATGCCGCGACCTTGGTAAACAAGAAAAAACTCCCACAATAACATG
ACTTCTTTTACAAACAATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_c03.b1 MSMg01no088_c03.b1 CHROMAT_FILE:
MSMg01no088_c03.b1 PHD_FILE: MSMg01no088_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:30 2005
         (181 letters)



>mm_chr15_102954158_102954740
          Length = 583

 Score =  319 bits (165), Expect = 6e-92
 Identities = 178/183 (97%), Gaps = 2/183 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcctccttgtttgtagagaggagataaacgcatgcgatagtcctgattttattaaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctttcctccttgtttgtaaagaggagataaacgcatgcgatagtcctgattttattaaa 324

                                                                       
Query: 61  aaagcgctctctca--gtgtgtgtgcgtttgtctgtatgaaaattactctacaggaagct 118
           ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 aaagcgctctctcagtgtgtgtgtgtgtttgtctgtatgaaaattactctacaggaagct 264

                                                                       
Query: 119 acttgggcctgagatttaatatatacaaatactgtcagctcctcccttcacgtgacagag 178
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 acttgggcctgagatttaatatatacaaacactgtcagctcctcccttcacgtgacagag 204

              
Query: 179 caa 181
           |||
Sbjct: 203 caa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 583
Length adjustment: 8
Effective length of query: 173
Effective length of database: 575
Effective search space:    99475
Effective search space used:    99475
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)