BAC Information

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BAC

Clone NameMSMg01-088M06
Chromosome15 (Build37)
Map Location 52,738,840 - 52,739,168
singlet/doubletsinglet
Overlap genenone
Upstream geneRad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
Downstream geneLOC100039745, Ext1, Samd12, EG665097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M06.T7 (MSMg01no088_m06.b1)MSMg01-088M06.TJ (MSMg01no088_m06.g1)
ACCAG307436AG307437
length665702
length of high quality
(start - end)
532 (31 - 562)564 (75 - 638)
definitionCHROMAT_FILE: MSMg01no088_m06.b1 PHD_FILE: MSMg01no088_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005CHROMAT_FILE: MSMg01no088_m06.g1 PHD_FILE: MSMg01no088_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATCGGAAGAGATCCGCGGAATTCTATCTTCC
TTCTACCCCCACATATAACTTCACCTGCTCTGGGAACTTAATTACACCCG
AGACTCATGAACCTATTCCTGGCCTCTGTGTGATCAATGCCCAAGTTTTT
CTTTCTAATTTACTTATTTTTATGTGTGGGAGTATTTTGCCTGAATGTAT
GTCAACTTACCACATGAATGCAGGGCCCACGAATGCCAGAAGAGGGCATC
AGATCTCCCAGGACTGGAGTTACAGGTTAGAAGCCTCTATGTGGGTACTG
AGAACTGAACTCAAATTCTTTGGAATAACAGCCTGTGCTCTTAAGGTCTG
TTCCATCTCACCAGACTTCTCTTGAGTTTTCATACAACTTAAAAACAAAC
AAACAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAGATTTGCCAC
CCCTTCCTTAACCAAAAAAGCTACACATTTCAGGATTACTTTATTTGTTA
AAAATTTTCATTTTTAAATAAAACATTCTTTCCAGAGCTAGAGAAAGCAC
CCAAGGAACTAAAGGGATCTGAAACCCTGTAAGTGGAACAACAATATGAA
CTAACCAGTACCCCGGAGCCCATGTCTCTAGCTGCATATGTATCAGAAGA
TGGCCTAGTCGGTCA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAGC
AAAGCACCTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACAGCAGTCAGAATGGCTAAGATG
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTTCACTGGAGGATCCAG
CAATACCTTTCCTGGGCATATACCCAGAAGATGTCCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTATCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGTCCAAAACTTAGGATACCTAAGATATAAGATACCATTTGCTA
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m06.b1 MSMg01no088_m06.b1 CHROMAT_FILE:
MSMg01no088_m06.b1 PHD_FILE: MSMg01no088_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:21 2005
         (532 letters)



>mm_chr15_52738840_52739772
          Length = 933

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%), Gaps = 1/329 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  ccttctacccc-cacatataacttcacctgctctgggaacttaattacacccgagactca 77
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 329 ccttctaccccacacatataacttcacctgctctgggaacttaattacacctgagactca 270

                                                                       
Query: 78  tgaacctattcctggcctctgtgtgatcaatgcccaagtttttctttctaatttacttat 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgaacctattcctggcctctgtgtgatcaatgcccaagtttttctttctaatttacttat 210

                                                                       
Query: 138 ttttatgtgtgggagtattttgcctgaatgtatgtcaacttaccacatgaatgcagggcc 197
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 209 ttttatgtgtgggagtattttgcctgaatgtatgtcaacttaccacatgaatgcagtgcc 150

                                                                       
Query: 198 cacgaatgccagaagagggcatcagatctcccaggactggagttacaggttagaagcctc 257
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cacggatgccagaagagggcatcagatctcccaggactggagttacaggttagaagcctc 90

                                                                       
Query: 258 tatgtgggtactgagaactgaactcaaattctttggaataacagcctgtgctcttaaggt 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tatgtgggtactgagaactgaactcaaattctttggaataacagcctgtgctcttaaggt 30

                                        
Query: 318 ctgttccatctcaccagacttctcttgag 346
           |||||||||||||||||||||||||||||
Sbjct: 29  ctgttccatctcaccagacttctcttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)