BAC Information

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BAC

Clone NameMSMg01-089F07
Chromosome15 (Build37)
Map Location 60,413,812 - 60,414,121
singlet/doubletsinglet
Overlap genenone
Upstream geneNsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
Downstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089F07.T7 (MSMg01no089_f07.b1)MSMg01-089F07.TJ (MSMg01no089_f07.g1)
ACCAG307859AG307860
length696673
length of high quality
(start - end)
314 (34 - 347)447 (54 - 500)
definitionCHROMAT_FILE: MSMg01no089_f07.b1 PHD_FILE: MSMg01no089_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:06 2005CHROMAT_FILE: MSMg01no089_f07.g1 PHD_FILE: MSMg01no089_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAATT
CGATCCAGATGTCCTACATGGAATCTGCCTGTGATGAAGAAGTGACACAA
TGATCCACACCTTAATGCATAGCATTACTTTCAATGCCTGGTTCCTATGC
TTAGCATAAGCAGCTATACTATTATCTTGTGCTTAGTAGGAGCTCACTAA
GTCCTATGGGAATGCAGACATAGAGCAGGCATCAATAAGGTGTGTCTTCC
ATTCACTGTAGTCAGTCCTCTCCTATGAATGACCTATATTGATTCCAGTC
CCTATAGCCATTATGTGACTGGGTTTTAAGTGCCTTTAAACTTATATATT
GATGCTCTACCCACATATGCAAATGTATTTCATTTGCCAAGCCTAATGCT
GATAATGGGATAATTAATTAAGTCATGCGAGCTATCCTTGCCACTAATTC
AAGGTAATAGACTTGAGCTGAGGACCCAGCTTGAATTCATTTCCAGCATT
TCTCTTTTAAAGCTGGAATTTTCCAGTATTAAATATAGAGATTTCTTTTT
TTAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTACCCC
AAAAGCCCCCCATACCCTTCCCCCCACTCCCCTACCCACCCACTCCCACT
TTTTTGGCCCTGGGCATTCCCCTGGACTGGGGCAAAATAAAAAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATTTTAAAACTTAAAAGACAAATCAGAGAGAAGACAATGTTGCCCAC
TTCCTTAGTAGCTTTTCAATATAGTACTAGAAGTTTTATCTAGAGCAATA
AGACAACTAAACGAGATCAAGTGGATTCAAAATGGAAAGAAGTCAAAGTA
TTGCTATTTGCAGATGATGTGATAGTGATCTCAAAATTTCTACCAGAGAA
CTCCTACAGCTGATAAATACCTTCAGTAAATTGACTGGTTACAGAATTAA
TACAAAAAAGCAGTAGCCCTCCTTAATATAAATAATCAATGAGCTGGGAA
AAATTAGGAAAGCACCATTCTTCACAATAGCCAAAACGAATATAAAATAT
TTTGGTGTAACTCTAACCAAGCAAGTGAAAGTGCTTTGTGACAAGATCTT
TGAGTCTTTGAAGAAAAATCAAAAATGAGGAATATTTCAGAAGATACAGA
AGATAGAAAGGTCTACAATACTCATTAATTAATAGGATTAACATAGGACA
ACTGGCCATCTTACCTAAAGCAACACCTGTAAAATCAAATATTCACTTCG
TATGGAAACCCAAAATCCCGGGATAGTAAAGTAATCCTGTACCATAAAAG
GACTTCTGAAGGTATTACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_f07.b1 MSMg01no089_f07.b1 CHROMAT_FILE:
MSMg01no089_f07.b1 PHD_FILE: MSMg01no089_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:06 2005
         (314 letters)



>mm_chr15_60413608_60414324
          Length = 717

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%), Gaps = 3/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaattcg-atccagatgtc-ctacatggaatctgcctgtgatgaagaagtg- 61
           ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| || 
Sbjct: 514 gaattctctaatttgtatccagatgtcactacatggaatctgcctgtgatgaagaaatgc 455

                                                                       
Query: 62  acacaatgatccacaccttaatgcatagcattactttcaatgcctggttcctatgcttag 121
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acacaatgatcaataccttaatgcatagcattactttcaatgcctggttcctatgcttag 395

                                                                       
Query: 122 cataagcagctatactattatcttgtgcttagtaggagctcactaagtcctatgggaatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cataagcagctatactattatcttgtgcttagtaggagctcactaagtcctatgggaatg 335

                                                                       
Query: 182 cagacatagagcaggcatcaataaggtgtgtcttccattcactgtagtcagtcctctcct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagacatagagcaggcatcaataaggtgtgtcttccattcactgtagtcagtcctctcct 275

                                                                       
Query: 242 atgaatgacctatattgattccagtccctatagccattatgtgactgggttttaagtgcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgaatgacctatattgattccagtccctatagccattatgtgactgggttttaagtgcc 215

                     
Query: 302 tttaaactta 311
           ||||||||||
Sbjct: 214 tttaaactta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 717
Length adjustment: 9
Effective length of query: 305
Effective length of database: 708
Effective search space:   215940
Effective search space used:   215940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)