BAC Information

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BAC

Clone NameMSMg01-089K20
Chromosome15 (Build37)
Map Location 12,354,421 - 12,354,701
singlet/doubletsinglet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K20.T7 (MSMg01no089_k20.b1)MSMg01-089K20.TJ (MSMg01no089_k20.g1)
ACCAG308113AG308114
length680695
length of high quality
(start - end)
295 (32 - 326)246 (56 - 301)
definitionCHROMAT_FILE: MSMg01no089_k20.b1 PHD_FILE: MSMg01no089_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:34 2005CHROMAT_FILE: MSMg01no089_k20.g1 PHD_FILE: MSMg01no089_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTCCCCTGCATTGCCATATCTCAGATGGGGACACT
GACGCTCACAGGATTCGGCATATAACACTAATAAAATGTGCAACCAGGAT
GTGTGTCTTATGGCTGGGTTCTCTGCCCACCTCCATTCCTGCAACACCTG
AAGCTAAAACTGCCTTTTCTTTTCTTTTTTTTTTTTTTAACTAAGAGAGA
ATTTCACAGATGGTAGGATAGACGAGGGTCTGGAAAGTTCTATTAGATTC
CAGGAGTATAATAGCATTGCCTTGCACGAATTATAAACTTCTCATGATTG
TACACCCTATTAACTGCTAGACTGATTTGTTTCCTCCCCCCCCCCCCCGC
TAATTTTCTTCTAGAACAGCTACAAAGCCATTTCCAGAGCAGGAACCTTT
TTGTTCTGCAAATTTGGAGGAGTGAATGGTCCCAGCAAAAGGATTCTCTT
AGCGCAGGCCTTTCCAGACTATTGTCTGTTGACTATCGCTCAGGACTACC
GGGAGGCTCATTGCCTTGAATATGTACAGCGCTTTGCACACGGTTTCCTG
CTAGAATCTGCAGTTAACGTGTCTCCTCAGTCTACTTCCCGGTTATTGAG
ATCTGAGCCATCCAGTGTGTTCAACCCTTTTTCCATTATGTGACCGAAAT
GGTCTTCTGTTCCCTAATACTTCTTGCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGTGGAGACAGGGCTGGATAAGAAAGGACTCAGTAGGGCTGGAGA
GATGGCTCAGCCGTTAAGAGCACTGGCTGCTCTTCTGAAGGTCCTGAGTT
CAAATCCCAGCAACAACATGGTGGCTCACAAACATCTGTAATGACATCTG
ATGTCATCTTCTGAAGATAGACAGCTACAGTGTACTTACATATAATAAAT
AAATAGGCTGGGCATGGTGGTGCATGCCTTTAATCATCCCAACACTTGGG
AGGCATAGGCAGGCAAATTTCTGAGCTCTAAACCAGGGCAGCCTTGTACT
ACCTCGACTCGCACCCGCTCGAGTGGGCAGGTGTTTCATTGTATTTAACC
TCCCATCTATATAACAGAACATAGAGGTTTGTGATGTAATTCAGTGGCAG
AATACCCCAGCTACGCCTGCAAGGCTCCTGGATTCAATCTCTGCCTACCG
AAATCACACATCATACGGCCCACCGGTACCAACTACCCTAGTGTCCATTG
CTTGTCCGACGGCCCCCGTTTTTTTTTCTGTTCCCTTTCAATATTTTTTT
CGTCCCGTCCCTTTTTTCACCCAATTATCCTTACGTCTCTGTTTGTTCCT
CCTACTACCTTTATTTTTCCCCCCTCTTTTTCTTATTTCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k20.b1 MSMg01no089_k20.b1 CHROMAT_FILE:
MSMg01no089_k20.b1 PHD_FILE: MSMg01no089_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:34 2005
         (295 letters)



>mm_chr15_12354057_12354751
          Length = 695

 Score =  476 bits (246), Expect = e-139
 Identities = 278/294 (94%), Gaps = 13/294 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctcagatggggacactgacgctcacaggattcggcatataacactaataaaatgtgc 60
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 645 tatctcagatggggacactgatgctcacaggattcggcatatatcactaataaaatgtgc 586

                                                                       
Query: 61  aaccaggatgtgtgtcttatggctgggttctctgcccacctccattcctgcaacacctga 120
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaccaggatgtg---c--atggctgggttctctgcccacctccattcctgcaacacctga 531

                                                                       
Query: 121 agctaaaactgccttttcttttcttttttttttttttaactaagagagaatttcacagat 180
           |||||||||||||||   |||| |||||||||||||||||    ||||||||||||||||
Sbjct: 530 agctaaaactgcctt---tttt-ttttttttttttttaac----agagaatttcacagat 479

                                                                       
Query: 181 ggtaggatagacgagggtctggaaagttctattagattccaggagtataatagcattgcc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 478 ggtaggatagacgagggtctggaaagttctattagattccaagagtataatagcattgcc 419

                                                                 
Query: 241 ttgcacgaattataaacttctcatgattgtacaccctattaactgctagactga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgcacgaattataaacttctcatgattgtacaccctattaactgctagactga 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)