BAC Information

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BAC

Clone NameMSMg01-089N11
Chromosome15 (Build37)
Map Location 95,887,992 - 95,888,412
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem117, LOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
Downstream geneD030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089N11.T7 (MSMg01no089_n11.b1)MSMg01-089N11.TJ (MSMg01no089_n11.g1)
ACCAG308233AG308234
length672680
length of high quality
(start - end)
326 (5 - 330)442 (55 - 496)
definitionCHROMAT_FILE: MSMg01no089_n11.b1 PHD_FILE: MSMg01no089_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:48 2005CHROMAT_FILE: MSMg01no089_n11.g1 PHD_FILE: MSMg01no089_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCCATGATCATGGGCCCACTGTCGTACTTCTCTGGC
TGTGAAATGAGTTCCTTGGTCAGAAGCAATACCGTGTGGAATACCATGAC
GATAGATAAGGCATTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGAGGCA
TTACGTGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGT
AAGAACAAAACGCTGTCCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAA
CCTGCCACCAGGTTGCTGGTTGGTCACCTCTAGGAATGGTGCCATATCTG
GGGCTCAGTGTTGGTTTCTGTTGTTGGCACACCTGCCCATCAGCAGCAGC
TGTAGCCAGGTCAGCTTTGGTGAGCGCAAGCCCGAGTTGCTGAGCCCAAG
CATAACCTCCATCTCGACCACCATGACCACTTTGTTCATGTGCCCATTGA
GCAATGACAGGGATGGCTGGGGAGAGAGGCTGACTGTCCACAGAACGGGT
CATCTTATCCACTTGATTATTGAACTCCTCTTCGGCTGAAGTCACCTTTT
GGTGAGCATTTACATGGGACACAAATATCTTCACATCCTTTGCCCATTTG
GAGAGATCTATCCACATACTTCTTCTCCAGATGTCTTTCTCACCAATTTT
CCATTGTGATCTTTCCAAGTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTTCAGGTAGATAGAAACAGGAAGTTTGTCCTGCATTGGGGCTGGA
GAGATGTCTCAGCAGTTAAAAGGGAGTGCTTACTCTTCCAGAGGAATTGG
TTCAGGTTCCATTAGCAGTCTCAGAAGCTTCACAAACATCTTCCCCTCCA
GCTCTAGGAAGGTCTTATGCCTTCTTCTGGCCTCTTCTCACACACGCACA
CACACACGTACACACACACATATGCACACATTCATACACACACAGAGTCA
GCACCCACATAGACATATATGCCTATACTTAATATAAAAACACATTTTTT
AAGTCTGTCCTACACAAACAAATGAAGGTCTCTGAAAATAATTTAAAATG
AAAGTATTTTGAAAGCCTGTTTTTTTTTTTTTAACTTTTGAAAATTGCCC
GTAAATATAAGCAACCAAGAAATAGCAATGCTGCTTAGTCTAAGATGTAC
TTAAAGAGAGCACGTTTGTGAAGAGGATAAGGGAGCCGTGCAAGAGTGGG
TCTTACATGTTGGGTAGGGAGATAGAAAGATTAAACCCAGAGGCCGAGAT
GATGGGGGTAAAATCCGGGTTTCCTAGGCTTGGACTCACCCATTGCCCTT
CGGAATTCACGGCGGTTAATGTGCCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_n11.g1 MSMg01no089_n11.g1 CHROMAT_FILE:
MSMg01no089_n11.g1 PHD_FILE: MSMg01no089_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:48 2005
         (442 letters)



>mm_chr15_95887574_95888412
          Length = 839

 Score =  746 bits (386), Expect = 0.0
 Identities = 408/424 (96%), Gaps = 15/424 (3%)
 Strand = Plus / Minus

                                                                       
Query: 31  ctgcattggggctggagagatgtctcagcagttaaaagggagtgcttactcttccagagg 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctgcattggggctggagagatgtctcagcagttaaaagggagtgcttactcttccagagg 780

                                                                       
Query: 91  aattggttcaggttccattagcagtctcagaagcttcacaaacatcttcccctccagctc 150
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aattggttcaggtcccattagcagtctcagaagcttcacaaacatcttcccctccagctc 720

                                                                       
Query: 151 taggaaggtcttatgccttcttctggcctcttctca------------cacacgcacaca 198
           ||||||||||||||||||||||||||||||||||||            ||||||||||||
Sbjct: 719 taggaaggtcttatgccttcttctggcctcttctcacacacgcgcatgcacacgcacaca 660

                                                                       
Query: 199 cacacgtacacacacacatatgcacacattcatacacacacagagtcagcacccacatag 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacacgtacacacacacatatgcacacattcatacacacacagagtcagcacccacatag 600

                                                                       
Query: 259 acatatatgcctatacttaatataaaaacacattttttaagtctgtcctacacaaacaaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 acatatatgcctatacttaatataaaaacacattttttaagtctgtcctacacaaacaaa 540

                                                                       
Query: 319 tgaaggtctctgaaaataatttaaaatgaaagtattttgaaagcctgttttttttttttt 378
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 539 tgaaggtctctgaaaataatttaaaatgaaagtattttgaaagcctg---tttttttttt 483

                                                                       
Query: 379 aacttttgaaaattgcccgtaaatataagcaaccaagaaatagcaatgctgcttagtcta 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacttttgaaaattgcccgtaaatataagcaaccaagaaatagcaatgctgcttagtcta 423

               
Query: 439 agat 442
           ||||
Sbjct: 422 agat 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 839
Length adjustment: 9
Effective length of query: 433
Effective length of database: 830
Effective search space:   359390
Effective search space used:   359390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)