BAC Information

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BAC

Clone NameMSMg01-091A06
Chromosome15 (Build37)
Map Location 43,027,198 - 43,027,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091A06.T7 (MSMg01no091_a06.b1)MSMg01-091A06.TJ (MSMg01no091_a06.g1)
ACCAG309083AG309084
length715736
length of high quality
(start - end)
303 (64 - 366)124 (128 - 251)
definitionCHROMAT_FILE: MSMg01no091_a06.b1 PHD_FILE: MSMg01no091_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:22 2005CHROMAT_FILE: MSMg01no091_a06.g1 PHD_FILE: MSMg01no091_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGCAATACTGAATGGCCAAGAAACACCTGAAAAAATGTTCA
ACATCCTTAATCATCTGGCAAATGCAAATCAAAACAACCCTGAGATTCCA
CTTCACTCCAGTCAGACTGGCTAAAATCAAAAACTTCGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAA
ATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATAT
ATCCAGAACATGTCCCAACCGGTAAGAAGGACACATGCTCTACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAATGAATCCAGATGCCC
CTCATCAGAGCAATGGATACAGAACATGCGGTACATTCTCATAATGGATT
ACCACTCCACTATCTAAAACAATGAACTTTACGACATTCTTACGTCAATG
GATGCGATTTCCGTGCATCCTCTCTGATTGAGGTAACCCATCTTTTTACG
ATCTCTTACCATATGTCCTCTCTGACTATTCGGACCCTAGACCCAGAATT
TCATGGACACCCTTGATTTCATATTACTCCCTGTTTCCACCTTTCATATT
TCCCTACCCAACTCC
TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAGCAAAAAACTTCTCCA
GCAAAGAGCAATAAATCAGATTACACCAGTTCCTCTCTGAGTCTTCTCCA
GTAAATGTCATCTTTTCCAGGCAAATGGGAGCAGGCAGCGAAAAGGAAAG
GAGCTCGGGTTTCCCTGTGATGTGATTACTACCTTGGGGGAGGGAGGGGG
AGGGAAGACGCCTCTTTTCCTATTCATTCCCTTCTCTCATTACTCAATAT
TTATCCTCTACACACCTTTTATCTTCTTTTTCCTCATAACACCAATACCA
ACCACAATTTCTACTCTCCACCCCCCCCACTTCCATACTTTTCCAATATA
ATTCACTACTCTAATTTCTTTTTACTTCTTTTCATTTCTCCTTTCCTCCT
TCTACCCTCCCTACCCTCCTACCTTTCACCCCTCCCCCCCTTTATATTTT
TTAACTTCCTTTCTCTTCCCCATTTACTTTCCCTCCTTATTCCTACCCTC
CCCCACCATCTCACTTTTTTTTCCTTTTTTACCTATTTCTTCCCTTCGTT
TCCCCCCCACTTTCCCCCCTCCTCCCCCTTTTCACCTATCCTCTCCCTCA
TCTTTTTTCTATCTCTCATTCCCCTATTCTCTTTTCCACTCCTCCATCCC
TCTTTATTTATCCCTCCCTACTATTTTCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_a06.g1 MSMg01no091_a06.g1 CHROMAT_FILE:
MSMg01no091_a06.g1 PHD_FILE: MSMg01no091_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:22 2005
         (124 letters)



>mm_chr15_43026998_43027521
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcctctctgagtcttctccagtaaatgtcatcttttccaggcaaatgggagcaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcctctctgagtcttctccagtaaatgtcatcttttccaggcaaatgggagcaggca 260

                                                                       
Query: 61  gcgaaaaggaaaggagctcgggtttccctgtgatgtgattactaccttgggggagggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgaaaaggaaaggagctcgggtttccctgtgatgtgattactaccttgggggagggagg 320

               
Query: 121 ggga 124
           ||||
Sbjct: 321 ggga 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)