BAC Information

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BAC

Clone NameMSMg01-091G09
Chromosome15 (Build37)
Map Location 102,372,252 - 102,372,634
singlet/doubletsinglet
Overlap geneAtf7
Upstream geneKrt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091G09.T7 (MSMg01no091_g09.b1)MSMg01-091G09.TJ (MSMg01no091_g09.g1)
ACCAG309361AG309362
length710696
length of high quality
(start - end)		335 (72 - 406)383 (72 - 454)
definitionCHROMAT_FILE: MSMg01no091_g09.b1 PHD_FILE: MSMg01no091_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:54 2005CHROMAT_FILE: MSMg01no091_g09.g1 PHD_FILE: MSMg01no091_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAATTTGTTGCTACAAGGAATAATGTGACACAGTGCACGTGTGAAG
TCCCAGTACCAGGGACACTAAACCAGGAGGGTTGCTTAGCCTGGGGCTTC
AAGGTCAGCCTGGGCAACATAGCAAGATTTCTGTGTCTTTTAGGATTTGT
TTTGTTTTTAAAGATTTTTGTTGTTGTTGTTTTGTAGAAAATTGTCTCAT
GTGTATGAGTGTTTTGCTTATATATATGATATGTGTGCCTAGTATGGTAT
GCAAGGAGATCAGAAGAGTGCTGTATCTCCTGCAATTACGGATGAGTGTG
AGACACTGTGTGGGTGTTGGAAATTGAACCTGGGTCTCTTCTAATGCCCT
TAACCTCTAAGGCATCTCTCCAGTCCAGTTGTTGTTGTTTTTGTTTTGAG
ACAGGGTCTCTTGTGTACCCCTGGCTAGTCTGTATCTTGGAGATATCCGT
CTTCCTCTGCTTCCTAACCCTAGATTATAGGTGCCTGCCCTTCTCACAAT
ATTATATTACGAATATTTAGATTGATTCCAGGTTTCTGACTACATTTGAC
ACCTTAGTAACGACCGCCCCTATACCTTTCCTATTGCCTTGCCCTGGCAC
TTGTCTCTAAATTTACCCTCCCATGCTTTTTCCGAAATTCCTTTGTCCTT
TTTATTTCCC

CAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGTTCTTCCTGGCTCTATTCCCCCCAAT
TGCTGGAACTTTTGATATTGCCGCTCTTCCTGTCTTATCCTAAGCAGCTC
GGATTGCAGGCCTGTGCCATAAGGCCCAACTACTTGGTCTCTTTCCTTCC
CTTCCTCTCCCTTCTTTCCTTCTTTGATACAGTGTCAAATCCACTGGAAC
ATGATGGTTATGAACCACCATGTAGGTGCTGGGAACTGAACTAAAGTCCT
CTGCAAGAGCATAAGTGGCTCTTGACTGCTGAGCCATTTCTCCAGCCTCC
TGAGACAGGATCTTATTTCTGTAGTCCAATTTAATCCAAACCCCACTATG
GAGCCCAGGTTAGCCTGGAAGTCCCTTTAAAATTTGTATCTCAAACTCCT
GATCATGGGAGTTACAGCTGTGCAATGTTACACCTAGTGCTTTTTGTTTC
TTTACAGCATGTAGTCTTGTACGCCAGGACATCCTAATTATGGAAAGTGA
CAGGCTAGTTATGTGATTTTATTTCTCCACCAGCCAAATGAACCAATTCA
AGCTAAAATTAACGAATGTAAACCAGATATTTGGTAAACCACTCCTCAAG
TGGCAAAAGTTAACTCTTCCCAAAGAATGACGGCAAGGGAATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_g09.g1 MSMg01no091_g09.g1 CHROMAT_FILE:
MSMg01no091_g09.g1 PHD_FILE: MSMg01no091_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:54 2005
         (383 letters)



>mm_chr15_102372052_102372834
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttcttcctggctctattccccccaattgctggaacttttgatattgccgctcttcct 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 ctgttcttcctggctctattccccccaattgctggaacttttgagattgctgctcttcct 260

                                                                       
Query: 61  gtcttatcctaagcagctcggattgcaggcctgtgccataaggcccaactacttggtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttatcctaagcagctcggattgcaggcctgtgccataaggcccaactacttggtctc 320

                                                                       
Query: 121 tttccttcccttcctctcccttctttccttctttgatacagtgtcaaatccactggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccttcccttcctctcccttctttccttctttgatacagtgtcaaatccactggaaca 380

                                                                       
Query: 181 tgatggttatgaaccaccatgtaggtgctgggaactgaactaaagtcctctgcaagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatggttatgaaccaccatgtaggtgctgggaactgaactaaagtcctctgcaagagca 440

                                                                       
Query: 241 taagtggctcttgactgctgagccatttctccagcctcctgagacaggatcttatttctg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 taagtggctcttgactgctgagccatttctccagcctcctgacacaggatcttatttctg 500

                                                                       
Query: 301 tagtccaatttaatccaaaccccactatggagcccaggttagcctggaagtccctttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtccaatttaatccaaaccccactatggagcccaggttagcctggaagtccctttaaa 560

                                  
Query: 361 atttgtatctcaaactcctgatc 383
           |||||||||||||||||||||||
Sbjct: 561 atttgtatctcaaactcctgatc 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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