BAC Information

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BAC

Clone NameMSMg01-092G22
Chromosome15 (Build37)
Map Location 54,298,715 - 54,299,246
singlet/doubletsinglet
Overlap genenone
Upstream geneSamd12, EG665097, EG621631, Tnfrsf11b, LOC665280, EG383032, Colec10
Downstream geneMal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092G22.T7 (MSMg01no092_g22.b1)MSMg01-092G22.TJ (MSMg01no092_g22.g1)
ACCAG310122AG310123
length697693
length of high quality
(start - end)
452 (45 - 496)523 (74 - 596)
definitionCHROMAT_FILE: MSMg01no092_g22.b1 PHD_FILE: MSMg01no092_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:17 2005CHROMAT_FILE: MSMg01no092_g22.g1 PHD_FILE: MSMg01no092_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTCATGCCTATATAACAAGACCTCTTGCTAACTTAACCATCT
TTCCAGTCCCAAAGGGGAAAAAATCCACGTAAATACAGTAAATACACTCT
GAGTCATGACTATGAGCTGAGGTAATCCTGGAAATGCTCATTGGCCTCGA
GTGGCATGGTGGCATGCACATTTCAAGGATGCATTCTGTGTGTTCAGAAC
CAAGACTGCAGCATGCCACAAATACTTCCAGAAACACCTTGGATTTTCAA
TGCATTTAATATCAATTTCATGTTCAGAAACCTTTTTGCCAGAAGTTTTC
AGTACCACAACATTTGGTTATGCAATCCCATATAGGTGTGAACTCACAGA
TTATGATGTGGTATGGACGATTGATGTTTCCTTCCTTCAACTACGCATTC
TCTTTGTAAATAGCTCCTCACAACTGGCAGCAGAATTTTCAAGTCAGACT
TGATAATAATCCAGCTTATTGAGGTCATTAAATATCTCTGGATTTCTTTT
ATAAAATGCAAATAAGAAATAATGTCTACCTCAACAATTATCTATATTAA
CTGAGCCAGTACATTTAAAGGTCTTAGTCTGAAGTCATGAATGTTTTTTA
TAAGGTTTACTCATAAGTAATATTGTCCTCATCATCATTGGGGTCGA
CAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCATATATCAAAGAGTGTACTGTAA
CCAGTGACTATGTTCAGCCAGCTGCTGGAGGCATAACAAGTACACACACA
CACACACACACACACATGCATATATATGTTTCATAATGAGAACAATGCAT
ACGATACAGAGTTAAACTGCACAAGAATCTTCTGTTTCCCATAAGGTACT
GCAAATTATAGATAAGGTTTGTTACAATCACAGTTTAATCAACTATAAAA
TGAGGTAATAACTTTGTTATCCTCTTCATATTTCACTATAAAACTGACCG
TCTGGGCAAATAAGAGTTTTGCTGACTGTCAGGTATAGGTCAGCAGAATG
ATAAAGCAAGAAAAATTTGCCACTTGGCAATATTCATTCATGCACAAACA
CAAAGATATATTCTATCTTGTAAGGAAATAATGTGGGTGGATATACACAT
TGACATGGGACTTCTTGTTCACATAAAAAAAAATGAGTAAGCCAAAATAG
TTGACTTAATATATTTGAACAGATGTGTCAGTGTTACTCTTTGAGAAAGG
GTGATGCAAATCCTCCTACAAAATGTCTTCAGACAAGTTATTTTAGCACA
CTGTAAAAGAGAGATTATGCTAAAACAACCCAGATACCAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_g22.g1 MSMg01no092_g22.g1 CHROMAT_FILE:
MSMg01no092_g22.g1 PHD_FILE: MSMg01no092_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:17 2005
         (523 letters)



>mm_chr15_54298422_54299344
          Length = 923

 Score =  971 bits (502), Expect = 0.0
 Identities = 521/532 (97%), Gaps = 9/532 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctc-atatatcaaagagtgtactgtaaccagtgactatgttcagccagctgctggaggc 59
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tctcaatatatcaaagagtgtactgtaaccagtgactatgttcagccagctgctggaggc 766

                                                                       
Query: 60  ataacaagt--------acacacacacacacacacacacacatgcatatatatgtttcat 111
           |||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ataacaagtacacacacacacacacacacacacacacacacatgcatatatatgtttcat 706

                                                                       
Query: 112 aatgagaacaatgcatacgatacagagttaaactgcacaagaatcttctgtttcccataa 171
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aatgagaacaatgcttatgatacagagttaaactgcacaagaatcttctgtttcccataa 646

                                                                       
Query: 172 ggtactgcaaattatagataaggtttgttacaatcacagtttaatcaactataaaatgag 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggtactgcaaattatagataaggtttgttacaatcacagtttaatcaactataaaatgag 586

                                                                       
Query: 232 gtaataactttgttatcctcttcatatttcactataaaactgaccgtctgggcaaataag 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtaataactttgttatcctcttcatatttcactataaaactgaccgtctgggcaaataag 526

                                                                       
Query: 292 agttttgctgactgtcaggtataggtcagcagaatgataaagcaagaaaaatttgccact 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agttttgctgactgtcaggtataggtcagcagaatgataaagcaagaaaaatttgccact 466

                                                                       
Query: 352 tggcaatattcattcatgcacaaacacaaagatatattctatcttgtaaggaaataatgt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tggcaatattcattcatgcacaaacacaaagatatattctatcttgtaaggaaataatgt 406

                                                                       
Query: 412 gggtggatatacacattgacatgggacttcttgttcacataaaaaaaaatgagtaagcca 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggtggatatacacattgacatgggacttcttgttcacataaaaaaaaatgagtaagcca 346

                                                               
Query: 472 aaatagttgacttaatatatttgaacagatgtgtcagtgttactctttgaga 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatagttgacttaatatatttgaacagatgtgtcagtgttactctttgaga 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)