BAC Information

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BAC

Clone NameMSMg01-092M08
Chromosome15 (Build37)
Map Location 18,745,711 - 18,746,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092M08.T7 (MSMg01no092_m08.b1)MSMg01-092M08.TJ (MSMg01no092_m08.g1)
ACCAG310379AG310380
length707710
length of high quality
(start - end)
462 (65 - 526)336 (68 - 403)
definitionCHROMAT_FILE: MSMg01no092_m08.b1 PHD_FILE: MSMg01no092_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:44 2005CHROMAT_FILE: MSMg01no092_m08.g1 PHD_FILE: MSMg01no092_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTTCCCTGAGCCCCATTTTTTAATGGGATTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCACAATCTGTTGGTGGCCTTTTTGTC
TTGTTGACGGTGTCTTTTGCCTTGCAGAATCTTTGCAACTTTATGAGTTC
CCATTTATCGATTCTCTATCTTACTGCACAAGCCATTGCTGTTCTATTCA
GGAACTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGACTTCCTTAATCCACTT
AGATTTGATCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTC
TACATGACAACCGCCAGTTGTGAGAGCACCATTTGTTGAAAATGCTGTCT
TTTGTCTACTAGATGGTTTTAGCTCCCTTGCCAAAGATCAAGTGACCATA
GGTGTGTGGTTTCATTTCTGGGTCTTCAATTCTGTCCCATTGGCCTACTA
GCCTGTCACCACAACCATACCTATGCCGTTTTTATCCCCATTGTTCTGCA
TTACTTCCTTAGGTTAGGCATGGTGATTCCACCAAAAGGTTCTTTTATCT
TTGAAAA
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAAGTTTAAGTAAGAGATGGAACGAGAAGGAA
GAGATGGAGAGAAGACACAAAGGCAGAATAGATATAAGAATTGATCACAT
TCTATTAATGCCCTCCACAAAAAAGTGTTCACTTCTTTATTCCTCACATC
TATATCTAAAACTGTAGTCAAAATGGTTGCGCGCCCTAGCAATCAAAACT
AGAGAAGAGAATACCTGCTGCCTAAAAAGTAAAGCCTTTGGTGCTTTGTT
TTATTAAACAGTACTATTTTCCAGTTCGTTATTTTATGCTAAACATGATG
TAGCCTGAAATTTTGGAAGATGCTCTGTTTGCAGATTTCCTGGTAAACTG
TCAAGGAGTGAGTCCCGGATATATGAAACAAACGGATGGAAATACAGAGG
TGCAGCTAGCTCTCTCAGCAAGGGAGGAATGAGCAAGTACCTCCTGAACA
GGTCTATGTGTGTTACAACTCATGTGCACTGAGAGCCAATTACACCTCAT
GGAAATTTAACATGTATATTTCCAACAACATGCCTATAACACAATTCTAG
TGACCCACAACATAATTTATTATTACAACTCACTAAAACATTCAAAGTAT
CCCCAATCATTGTTACACACATGGTCAATTTAAATTTTTATAAAAAATTC
CATAAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_m08.g1 MSMg01no092_m08.g1 CHROMAT_FILE:
MSMg01no092_m08.g1 PHD_FILE: MSMg01no092_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:44 2005
         (336 letters)



>mm_chr15_18745511_18746246
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 331/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagtttaagtaagagatggaacgagaaggaagagatggagagaagacacaaaggcaga 60
           ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct: 536 ttaagtttaagtaagagatgggacgagaaggaagagatggagagaagagagaaaggcaga 477

                                                                       
Query: 61  atagatataagaattgatcacattctattaatgccctccacaaaaaagtgttcacttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atagatataagaattgatcacattctattaatgccctccacaaaaaagtgttcacttctt 417

                                                                       
Query: 121 tattcctcacatctatatctaaaactgtagtcaaaatggttgcgcgccctagcaatcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tattcctcacatctatatctaaaactgtagtcaaaatggttgcgcgccctagcaatcaaa 357

                                                                       
Query: 181 actagagaagagaatacctgctgcctaaaaagtaaagcctttggtgctttgttttattaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 356 actagagaaaagaatacctgctgcctaaaaagtaaagcctttggtgctttgttctattaa 297

                                                                       
Query: 241 acagtactattttccagttcgttattttatgctaaacatgatgtagcctgaaattttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acagtactattttccagttcgttattttatgctaaacatgatgtagcctgaaattttgga 237

                                               
Query: 301 agatgctctgtttgcagatttcctggtaaactgtca 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 agatgctctgtttgcagatttcctggtaaactgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)