BAC Information

Click to search

BAC

Clone NameMSMg01-092N05
Chromosome15 (Build37)
Map Location 98,399,440 - 98,399,631
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1
Downstream gene4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092N05.T7 (MSMg01no092_n05.b1)MSMg01-092N05.TJ (MSMg01no092_n05.g1)
ACCAG310421AG310422
length717775
length of high quality
(start - end)
192 (123 - 314)146 (122 - 267)
definitionCHROMAT_FILE: MSMg01no092_n05.b1 PHD_FILE: MSMg01no092_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:49 2005CHROMAT_FILE: MSMg01no092_n05.g1 PHD_FILE: MSMg01no092_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACCAGATTTCACAGCAGCCTCTCCTACCTGCTAAGCCACCTCGAGGGG
ACCCTCATTTATGCTGACACCTTTCCCAGAGGACTTCTGGCGAAAAAAAT
AGCCCCCAAATCTTCAAGATTGATTGCCAATCCCCTTGCTAGTGGGTGGA
TACAGTGGGCTCTTGGTAAACAAAAGATTTAGAGTTTGGGATTGTGTGAA
CATCAATACCGAGTTCAAGGCAGCGACCGAGGCCCGGGGACAGAGACACC
CTGGTGCAGCCAGGAGGCTGAGGCGGACATCGGTCCCAGCTTGCTTTTTA
CAACCTCACAAAGTGGACCTGGGAGTGAGGCCAGAGCACAAATTATCTCT
TGATCTCCTTCTTCTGATAATCCTCCCCAATGCAGGACACTAATTTATCT
CCAGATCTCCTTCGCTTGATAACCTTTCCCTACAGGTTGGGTTTCCTAGA
ATTACTGACCTGACCCGCAGGGATACTTGAATAACCTTGTTCCCTCCCTG
ACTGGATGTTTGGAATCTGAACCTGCAAGCTCATCGCCTTTCCTGACAAG
AGAAATGTATGCTTATTACTAAGGCCTCCCGAACTAACCGATATCGATCT
GTGGTGTCCTTGAGCCTGGTGGGGTGGAGGTTGTAGCCTTTTTATCCACG
CCTCGTTGCAACCCCGA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTCAGATCAACATTCAGGGCCCCATCAAATCT
GAGGGAAGCAGTGATGCCCGACACAATCTGGCTAATAAGGCGGTTAAGGT
TGGTGTAGGTTGGGCGCTCAATGTCGAGGTTTCTACGACAGATGTCATAG
ATGGCCTCATTGTCTACCATGAAGGCACAATCAGAGTGCTCCAGGGTGGT
GTGGGTGGTGAGGATGGAATTGTCGTGTTACCTCNTTGCTCCGTCTTTCT
GGTGGGCTGGTTCCTTGTTCTTATCCCTCTTCGTCCCTCCCCCTCCCTCT
CCTTCCTTTCTTCTTTTCTTCTCCCTTTTTGCTTCCCTTTTTTTCTCTCC
TTCCTTCCCCCTCCTCCCTCCTATACCACACCTTTTTTTTTTCTTCTCCC
CGCTCTTCTCCCTTTCTTCTTCCCCCTCCTCTTTCCTTTGTTTTTGTCCT
TCTCTTCCTCTTCCACTTTTCTTTTTTTCCTCCTTTCTTCTCCTCCCTAT
CTTTTCACACTCTCACTTTTCGTTCCCCATTTTATCCCAACACTTAATTT
TCCCCTCCTCCCCCCCCCAAACCTCTCTCAATTTTTCACTATATTTTCCC
TTCATCCCCCTTTCCTCTTTTCTCCCCCCCTCTTACTATCTCACCTCTAC
CCTCTTCTTCTACTATATTCTCTTTTCATCTTTCTTCTCATCCTTCCCAT
CCTCTATCATTTTCCTTACTACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_n05.b1 MSMg01no092_n05.b1 CHROMAT_FILE:
MSMg01no092_n05.b1 PHD_FILE: MSMg01no092_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:49 2005
         (192 letters)



>mm_chr15_98399240_98399831
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccagaggacttctggcgaaaaaaatagcccccaaatcttcaagattgattgccaatc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 392 ttcccagaggacttctggcgaaaaaaatagaccccaaatcttcaagattgattgccaatc 333

                                                                       
Query: 61  cccttgctagtgggtggatacagtgggctcttggtaaacaaaagatttagagtttgggat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 332 cccttgctagtgggtggatacagtgggctcttggtaaacaaaagatctagagtttgggat 273

                                                                       
Query: 121 tgtgtgaacatcaataccgagttcaaggcagcgaccgaggcccggggacagagacaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtgtgaacatcaataccgagttcaaggcagcgaccgaggcccggggacagagacaccct 213

                       
Query: 181 ggtgcagccagg 192
           ||||||||||||
Sbjct: 212 ggtgcagccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)