BAC Information

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BAC

Clone NameMSMg01-093P01
Chromosome15 (Build37)
Map Location 103,336,158 - 103,336,497
singlet/doubletsinglet
Overlap genePde1b
Upstream geneMap3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l
Downstream genePpp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093P01.T7 (MSMg01no093_p01.b1)MSMg01-093P01.TJ (MSMg01no093_p01.g1)
ACCAG311248AG311249
length1,2291,202
length of high quality
(start - end)
348 (36 - 383)375 (70 - 444)
definitionCHROMAT_FILE: MSMg01no093_p01.b1 PHD_FILE: MSMg01no093_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:18 2005CHROMAT_FILE: MSMg01no093_p01.g1 PHD_FILE: MSMg01no093_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTAA
AATGGAAATGCCCTTTACCTTCTCTCTCACTGGTGAGGGTAAAAGAGGCT
ACTTAGTCTGGAAACAGGGAGGTAGACCTGACTGTCTCAGGTCTGGGCAC
TGAATGGTAATGTAGACAGATGGGATTTCTACATATCTGAATCTTTTTGT
ATGTATCTTGGTTCTCAAACACAACACATCCTACCCGCGCCCCCCCCCCC
TTTAAAGTTCTAATCTAGGAATAGAGACTCTTAGGGTGCTTTTGCCTCTG
GACAGAAAACCTCCACTATTCCCATTGTTCAGGGTAGTTTCTTGTTGAAA
AGAACATCCAGGAATCCCATTTCTCATACTAGGACAGCTTTTTTTATCAA
CTAATAATCTGGGGCTATATGATTTAGGCAATTCTCCACCAGTGTTATTT
TACTTCTGGTTAGAAGGATAAATTTTCTAACTCTTGAGATCTTCTTTTTC
ATATATTGATATCTGCATCCTGAATATTATGTTCTATTCATGTTGATTTA
TATATCTCCAGTTTGATTACCACCTCTTTGCCCTGGTTGCCTATCCTTTT
TCCTCATTTTAGTTCATTGATTTATTTTCTTCTATTTATTTTCTTACCTA
TTTCTTTTTCTCTCTTTTTACTATCTTGTTTTTTTTCTTTTATTTTCTCT
TATTTCCTTTTTTTCTTTCTTTTTTCTTATTTATTTTTTTCTTCCTTTTA
TTTTCTCCTACTTTTCTCTTTCTTCCTTTTTCCTCCTTCTTTCTTTTTTC
CCTTACTCCTCCTCATTTTTTCTTTTTTTTATTCTTTTCAAAAAGAAGNN
NTNNNNNNNNNNACAGCCTTCCGCCCNNNNNNNNNNCNNNNNNNNNCNNC
NNNTNNTNTNNTTNCNNNTCCCCTTTNNTNTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTCTTTTTTNTTN
TTTTTTTTTTTTTTCTNNTTTTTTTTTTTTTTTTTNNTTTTTTNTTTTNN
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTCNTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTNT
TNTTTTTTTNNTTTNNTTTTTTTTTNNTTTTTTTTTTTTTNTNNTCTTNT
TTTTTTTTTTTNTCTTCTTTTTCTTTTTA
NAAATCACTGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTATTTGCTTTGATTAAATAGCTTGTCA
CACATTGGCAAGCTTAAAAGTCATTGGGGATTAACACCTTCCTTATAATC
AGCCTGTGAAACTATAGATCTGATTACTGATTTACTAATTGGGAAAACTG
TATTTCTGCCTAAAGAATTATAAAGAGTATTATCTATTTAAAGTCTTTCT
GGGAAAGAGTGATTTAACCCTATGGTAATAATTCACTCAGGCAAGAAAAC
TTTAGATAGCTTAGGAAAACCATCTATCCTAGAGATGTTAATAAATCATA
TAAACCCACCAAAAATGTAGATTAGCAAAATGGTCCCCTTGGCTGTTGTC
CACTGTTACCTGTTGGTCAAGCCTTTTATTAATGTGTAACAAACCTTTTT
TTTCTCCCCCCCTATGCTCTTTATTTCTTGTCAGAAAAGTGGGGAGGGAG
TCACAAGGATTGGGGATCCAGGGTGAGATCAAAAAGGGATTTTTCTCAAC
ATTCTGGCTGTCTTTTAAAGACTGACCCTAGAGTTATGTGTGATGTTTGG
TCATCGTATTGCTTCTGTTTGAATTCTCAAACTAGAAAAGTTCACATTTT
CAATTCCAGAACCAAGGAAAGACACTCACTATCTACCGTATAATCTATCT
GTATCTTCTCCTTCCTTTCATTTTTTGTTCCTTTATCTATGGGCACGCTT
TCACTGTACAAGCTAGCTTAACCTTCACATTTTTTTCTCTCTATTCCACC
TAATCCTGGTAATATTATATGTTCATCTCCCCGGGTTTCATCTTTGTATT
TTTTCCAATTAAATCTCCTACAGGCATATATTTGTTTTGTAATCAAGTTG
TCTGTTCTTCACTTCTACTCTAAAATTGATATTCCTTATAATATTTTTTG
CTTAAATATTTATTTTTTCGCTTTTTCTACCTTTATTGATATCCTTTGAA
ATAAGTCTCTGTTTACCTGTCTCCTCATTTATCTTTTTCCCTACATCTTT
CCTTATTTCATCTCGCGTTTTATCTCCCTTCACACACATCAACTTTTCTC
TATTATTGGATTCTATTTTTTCCCATATTCAAACTGTTTCTTCCCTCTTG
TCTCTTCTCCTGATTTACTACTCATTTTCTTTATTATTCCTATTTCTCTT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_p01.b1 MSMg01no093_p01.b1 CHROMAT_FILE:
MSMg01no093_p01.b1 PHD_FILE: MSMg01no093_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:18 2005
         (348 letters)



>mm_chr15_103335955_103336697
          Length = 743

 Score =  572 bits (296), Expect = e-168
 Identities = 331/348 (95%), Gaps = 11/348 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctaaaatggaaatg---ccctttaccttctctctcactggtgagggtaaaag 60
           ||||||||||||||||||||||   ||   | ||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctaaaatggaaatggaacc---tcccttctctctcactggtgagggtaaaag 260

                                                                       
Query: 61  aggctacttagtctggaaacagggaggtagacctgactgtctcaggtctgggcactgaat 120
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aggctatttagtctggaaacagggaggtagacatgactgtctcaggtctgggcactgaat 320

                                                                       
Query: 121 ggtaatgtagacagatgggatttctacatatctgaatctttttgtatgtatcttggttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaatgtagacagatgggatttctacatatctgaatctttttgtatgtatcttggttct 380

                                                                       
Query: 181 caaacacaacacatcctacccgcgccccccccccctttaaagttctaatctaggaataga 240
           |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacacaacacatcctaccc-----ccccccccctttaaagttctaatctaggaataga 435

                                                                       
Query: 241 gactcttagggtgcttttgcctctggacagaaaacctccactattcccattgttcagggt 300
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 436 gactcttagggtgcttttgcctctggacagaaaacctccactaatccaattgttcagggt 495

                                                           
Query: 301 agtttcttgttgaaaagaacatccaggaatcccatttctcatactagg 348
           ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 496 agtttcttgttgaaaagaacatctaggaatcccatttctcatactagg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 743
Length adjustment: 9
Effective length of query: 339
Effective length of database: 734
Effective search space:   248826
Effective search space used:   248826
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)