BAC Information

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BAC

Clone NameMSMg01-094A20
Chromosome15 (Build37)
Map Location 87,286,294 - 87,286,585
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094A20.T7 (MSMg01no094_a20.b1)MSMg01-094A20.TJ (MSMg01no094_a20.g1)
ACCAG311331AG311332
length767715
length of high quality
(start - end)
315 (112 - 426)293 (56 - 348)
definitionCHROMAT_FILE: MSMg01no094_a20.b1 PHD_FILE: MSMg01no094_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:32 2005CHROMAT_FILE: MSMg01no094_a20.g1 PHD_FILE: MSMg01no094_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTTTTTNTNNNTTNNNNNNTT
TTCCGGGNNNNNCTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCACCTGTACAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGCAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTTCAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCATAAGATGCCCCAACACCGTAACAAGG
ACACATGNCTCCACTATGTTCATAGCAGCCCTTATTTATAATAGCACAGA
AGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACTCAATGGAGTACTACTCACCTATTATAAAGAATGAAT
TTATGAAATTCCTAGCCCAATGGATGTGACCTGGAGGGCATCATCCTGAG
TGAGGCAACACATTCCCCCAATAAACTCACACTATATGTAATTCACTAGA
TTACCGGATATTACCCCCAAACCTAGGATACCCCAGAATAATAGATATAA
TTTGCTAATCATATGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGTGGCTGTGAGGCACAGTATGTGGTTCCTTGGGACTGAACCT
GGGTGGTTTGCAAGAGCAGTAAGATACTCTTAACCACCGGATCATCTCTC
CAGCATTCAGACCACTGCCTGTAAGTTCCACTTCAGTGTCAAACAGTTCG
TGCCTTAAAACACACGAACAAGATTTAAAATATACAATGACTCCCTGGCA
AAGGCAGATGAAAAACAGGAAGTTACAGACAAGTGCGGGCATCCCCAGGA
TGGCTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCC
CTTTCCCCTCTCCCCTCCCCTTTTTTCCCCCCCTCTCCTACTCCCACCCC
CCTTCCATATCACACACTCACTCCAAACTCCCTCTTTCCCTACCCTTTTT
CCCTTCTTCTTTCCCTTTTTTCCCTTTTTCCTCCCCTTTCCATTATCCCT
TTCTCTATCCTCTCTTTCCTTCCCCCTTCCTCTCCTTTTATCCATCCTTC
TTTTTCTTTTTTCCCCCTTTTATCCCACCCCCCCCCTTTTCGCCCCTTTT
TTTTTTTTTTCCTCGCATCCCCCCCCCACTATTCTTTCCCCACCCATTAC
CCTTTTTTTTCCCTTTTTCCTTTTTACCCCCCTATTATTCCCTCTTTCCC
CCCCCCTTCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_a20.g1 MSMg01no094_a20.g1 CHROMAT_FILE:
MSMg01no094_a20.g1 PHD_FILE: MSMg01no094_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:32 2005
         (293 letters)



>mm_chr15_87286034_87286726
          Length = 693

 Score =  497 bits (257), Expect = e-145
 Identities = 284/293 (96%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtggctgtgaggcacagtatgtggttccttgggactgaacctgggtggtttgcaaga 60
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caggtggctgtgaggcacagggtgtggttccttgggactgaacctgggtggtttgcaaga 493

                                                                       
Query: 61  gcagtaagatactcttaaccaccggatcatctctccagcattcagaccactgcctgtaag 120
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gcagtaag-gactcttaaccaccggatcatctctccagcattcagaccactgcctgtaag 434

                                                                       
Query: 121 ttccacttcagtgtcaaacagttcgtgccttaaaacacacgaacaagatttaaaatatac 180
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 433 ttccacttcagcgtcaaacagttcgtgccttaaaacacacgaataagatttaaaatatac 374

                                                                       
Query: 181 aatgactccctggcaaaggcagatgaaaaacaggaagttacagacaagtgcgggcatccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 aatgactccctggcaaaggcagatgaaaaacaggaagttacagacaagtgcgggcatctc 314

                                                                
Query: 241 caggatggctactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 293
           |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caggctggatactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)