BAC Information

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BAC

Clone NameMSMg01-096F07
Chromosome15 (Build37)
Map Location 99,917,749 - 100,012,035
singlet/doubletdoublet
Overlap gene4930478M13Rik, Dip2b
Upstream geneC1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Downstream geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F07.T7 (MSMg01no096_f07.b1)MSMg01-096F07.TJ (MSMg01no096_f07.g1)
ACCAG313033AG313034
length747767
length of high quality
(start - end)
457 (146 - 602)364 (133 - 496)
definitionCHROMAT_FILE: MSMg01no096_f07.b1 PHD_FILE: MSMg01no096_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005CHROMAT_FILE: MSMg01no096_f07.g1 PHD_FILE: MSMg01no096_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,011,579 - 100,012,035)(99,917,749 - 99,918,112)
sequence
NNNTTTTTTTTTTNNNNNNNNTNNNNTNTTNTTTTTTTCTCNCCCCCCCC
CTNTTCTCCCCCCCCGCCNNCATCTATAATTGCGGCCGCTAAACGACTCC
TATATTCAGAGAATCCGCGGAATTCTCCTCAGTCTCCANAATCAAAATCA
TTGACAGACTCTGAGACTGCTCACATTTCATGCCTCAGCTGCAGGACGGG
TATTTAAAGCTGGGCTTTGTCACTATAAGCTAGACCAGCCCAAGCACCTG
GAAGAACCACAGAGCGCAGCTCAGATCACCCCAGAGTGGTGACACGGATC
TCAGAGCACTCACCTTCCTCGATAGACGGTCTTTATGGACTCTACAGCCA
ATCCAGTAGCAACAATGTCATCGGCGTTATGTCTTCGGCCGCTGACCATG
AGTAATCCATCCATTTTTCCAACCACGAACACCAAGCTACCCTGAAAGTT
AGCAATGATTCACCTTCATTTCCATAGTTTAAAGGGTAAAACAGACACCT
TACATTTCCTGTTTTCATGAAAATGTCACTAAACAAAACCAAACCAAACA
CTAAGAAACGTACCTGTGAAACATGTACACAGTTCAACTCCCAACACCAC
AAAAACGTGTTTATACGAAAGAAAATACTGTCATACTTTATGGAATTTAT
TATTATTTTTCTTTACAATTAGTAAAAAAGCACATCTTACAGCCACCAAG
TCTTTAAAAGGATCGAATCTGTGTGCCTGTGTGGGGGCACAGGCAGG
TTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTCCCCCCCGCNNCAGCTCC
TCCCCNNNCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGAACTGGAGGTAGT
TGTCAGTGGAGTATCTGCTGCATGATGGGTGAGCTGTGGCTCTGGACTCT
GAGAAGCCAGGCACCACACACTTGGAATAGGTAGGCCGGTCCCTGCAGCT
CCCTGACCAGCCAGGGTCACTCTTTGGTCATCAGCCAGGTTCTAGTGAGA
GACCCTGTGCTAAAAGACAAGGTGGGTGATGGCTCACACTTAATCTCTGG
CCTCTATACACATATGTAAAACGTTTGTCAAACTCAGCTTTTCGAAACTT
GTGATTTTTGCTTGAAATCACTTTTCAGTTCATTGATTTTATTTATTTTT
GACAAAACAGCAGTTAGATATGCATTTCTTCTTCATTCTCTCAAGTAGAA
ATGGGGTCAAATAGGAAAAAGCAGCTGATCTAGCTTACCACTCGCTTGTA
AATGTGAAATGTTTCCCTTGAGCTATAACAACTATAATAAATGCTTCAAA
TAGGGGTTCAAACCGTTAATTACGGTATGCCGTGCCCTTAACGTTATGAT
TATAATACTTTGTCTTTTGAAGATTTCCTTCATTTGTTGTGCCTGCTGTT
CATTGTTGCGCTGCTCCGCTCATTGGAATTGCGTATTTATGTCCGTTCCG
CCTTCTTGCTTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f07.b1 MSMg01no096_f07.b1 CHROMAT_FILE:
MSMg01no096_f07.b1 PHD_FILE: MSMg01no096_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:39 2005
         (457 letters)



>mm_chr15_100011379_100012235
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcattgacagactctgagactgctcacatttcatgcctcagctgcaggacgggtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatcattgacagactctgagactgctcacatttcatgcctcagctgcaggacgggtattt 598

                                                                       
Query: 61  aaagctgggctttgtcactataagctagaccagcccaagcacctggaagaaccacagagc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaagctgggctttgtcactctaagctagaccagcccaagcacctggaagaaccacagagc 538

                                                                       
Query: 121 gcagctcagatcaccccagagtggtgacacggatctcagagcactcaccttcctcgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcagctcagatcaccccagagtggtgacacggatctcagagcactcaccttcctcgatag 478

                                                                       
Query: 181 acggtctttatggactctacagccaatccagtagcaacaatgtcatcggcgttatgtctt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acggtctttatggactccacagccaatccagtagcaacaatgtcatcggcgttatgtctt 418

                                                                       
Query: 241 cggccgctgaccatgagtaatccatccatttttccaaccacgaacaccaagctaccctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cggccgctgaccatgagtaatccatccatttttccaaccacgaacaccaagctaccctga 358

                                                                       
Query: 301 aagttagcaatgattcaccttcatttccatagtttaaagggtaaaacagacaccttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagttagcaatgattcaccttcatttccatagtttaaagggtaaaacagacaccttacat 298

                                                                       
Query: 361 ttcctgttttcatgaaaatgtcactaaacaaaaccaaaccaaacactaagaaacgtacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttcctgttttcatgaaaatgtcactaaacaaaaccaaaccaaacactaagaaacgtacct 238

                                                
Query: 421 gtgaaacatgtacacagttcaactcccaacaccacaa 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtgaaacatgtacacagttcaactcccaacaccacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no096_f07.g1 MSMg01no096_f07.g1 CHROMAT_FILE:
MSMg01no096_f07.g1 PHD_FILE: MSMg01no096_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:39 2005
         (364 letters)



>mm_chr15_99917549_99918312
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggaactggaggtagttgtcagtggagtatctgctgcatgatgggtgagctgtggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggaactggaggtagttgtcagtggagtatctgctgcatgatgggtgagctgtggctc 260

                                                                       
Query: 61  tggactctgagaagccaggcaccacacacttggaataggtaggccggtccctgcagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggactctgagaagccaggcaccacacacttggaataggtaggccggtccctgcagctcc 320

                                                                       
Query: 121 ctgaccagccagggtcactctttggtcatcagccaggttctagtgagagaccctgtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaccagccagggtcactctttggtcatcagccaggttctagtgagagaccctgtgcta 380

                                                                       
Query: 181 aaagacaaggtgggtgatggctcacacttaatctctggcctctatacacatatgtaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagacaaggtgggtgatggctcacacttaatctctggcctctatacacatatgtaaaac 440

                                                                       
Query: 241 gtttgtcaaactcagcttttcgaaacttgtgatttttgcttgaaatcacttttcagttca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgtcaaactcagcttttcaaaacttgtgatttttgcttgaaatcacttttcagttca 500

                                                                       
Query: 301 ttgattttatttatttttgacaaaacagcagttagatatgcatttcttcttcattctctc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatttcatttatttttgacaaaacagcagttagatatgcatttcttcttcattctctc 560

               
Query: 361 aagt 364
           ||||
Sbjct: 561 aagt 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)