BAC Information

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BAC

Clone NameMSMg01-097D20
Chromosome15 (Build37)
Map Location 54,950,927 - 55,006,498
singlet/doubletdoublet
Overlap geneDepdc6
Upstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik
Downstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D20.T7 (MSMg01no097_d20.b1)MSMg01-097D20.TJ (MSMg01no097_d20.g1)
ACCAG313721AG313722
length686657
length of high quality
(start - end)
314 (43 - 356)243 (47 - 289)
definitionCHROMAT_FILE: MSMg01no097_d20.b1 PHD_FILE: MSMg01no097_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:54 2005CHROMAT_FILE: MSMg01no097_d20.g1 PHD_FILE: MSMg01no097_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,950,927 - 54,951,237)(55,006,266 - 55,006,498)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCGTTTTGTCTCTTTTCCGTCCTTTTGATTCTCTTCTTTGGGCTTTAG
CTTTGTCTTTTGAAATCCTCCTACTGTCACCCAGTGGCTACTGGCATTGA
TGCAGGCTAAATAAAGACAAGGCTGACACCTGTCACTCACCTATACAGGC
CTTGAGCATTGACCTCTTGGCCCATCCTAAACCATTGACATCATTTTGAC
TACCTGGCCACCTTTCATATCATGGTGGGGAGGGTGTTGCTCTCCCATCT
ACCTTAGCTCAATCAGGATCTTAGGACAAACTTTGATGTCGTCCCTACCC
ACACAGAATAGCTGCTGCCCCCTACAGCGAGGACATGTTGCAATAATTAT
ATCCTCCACAGAAAGGCCATGTGGGTTCAGTGATGACAAACCGGATGTCC
CCTCTTCACCTCTACCCACCCAGCGTATAATGTGATTAAGGTAAAATTCA
GGGAAATATACCTAGCAGTGGCATCTATCCAGAGAAGAAAGTAGCTGTAG
AAAAGGTACAGGATATTGGCATGAACGTTTGAACTGCCTGCTTTTAGCAT
CGTGCTCCCTATATAGCTCCTTACAATGACAGCCTGCCCTGAGGTACACC
CCCCTCCCCCATCGCCTCAACCCCTACCTGCCTCTG
CGGTTGGCATGTAGCGGNGAANTATAGAAGTTTCCCAAAACACTCTGCGT
ATGATGATGATGACTACCCTAAAGGTTTCATGTGGCTACTATAGAAGGGA
AAAGTCAAACTCCGTCTTGCATCAAAATTAAGATTCTTTATATATTTCTA
CTAACAAGGACATCAACTCCGTTTTAGTTGGTAATCCTGAGGGTGGCTGT
TGGTCTCAACCATCTTCCCTTTTATAAGGCAAACTGACTTTTAGTAAAGC
TGTCTCATATGTTGGCCCATCAATCAGCATGGCACATAGCCTCCGCTCAT
CGACACAGCTGTGCATGGCTGAGCCTTGCCTTCTGCCAACACTCAGCAGA
TTCTGTTCATGCTTCTGAGCTCGTTCCCAACTTTCCTGGTGTGCATCTCA
GTCAGATTTCCCAGATTCACAGTAACCCAGAGGAAAGGCCACACAATAGA
AGGAACTGCCCCATTCAGGTGCCCAAACAGGAATAGAAATGAGCTGATAG
CAATCTCCTTACACACTGAAAAAAAAATTCAAATGGGCCAGGCAAGCCTT
GCGTAATGTGGGAAAATATGGGAAATGTATCCAGCGTCCAAGGTTGGGAC
AGGCAAGGCATGTCAGAGCGTGTCTATTTTCCACGCCCTGGAGGGCGGAG
GAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d20.b1 MSMg01no097_d20.b1 CHROMAT_FILE:
MSMg01no097_d20.b1 PHD_FILE: MSMg01no097_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:54 2005
         (314 letters)



>mm_chr15_54950724_54951437
          Length = 714

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccgttttgtctcttttccgtccttttgattctcttctttgggctttagctttg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccgttttgtttcttttccgtccttttgattctcttctttgggctttagctttg 263

                                                                       
Query: 64  tcttttgaaatcctcctactgtcacccagtggctactggcattgatgcaggctaaataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttttgaaatcctcctactgtcacccagtggctactggcattgatgcaggctaaataaa 323

                                                                       
Query: 124 gacaaggctgacacctgtcactcacctatacaggccttgagcattgacctcttggcccat 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacaaggctgacagctgtcactcacctatacaggccttgagcattgacctcttggcccat 383

                                                                       
Query: 184 cctaaaccattgacatcattttgactacctggccacctttcatatcatggtggggagggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctaaaccattgacatcattttgactacctggccacctttcatatcatggtggggagggt 443

                                                                       
Query: 244 gttgctctcccatctaccttagctcaatcaggatcttaggacaaactttgatgtcgtccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgctctcccatctaccttagctcaatcaggatcttaggacaaactttgatgtcgtccc 503

                      
Query: 304 tacccacacag 314
           |||||||||||
Sbjct: 504 tacccacacag 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no097_d20.g1 MSMg01no097_d20.g1 CHROMAT_FILE:
MSMg01no097_d20.g1 PHD_FILE: MSMg01no097_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:55 2005
         (243 letters)



>mm_chr15_55006059_55006701
          Length = 643

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   atgatgatgactaccctaaaggtttcatgtggctactatagaagggaaaagtcaaactcc 67
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgatgacgactaccctaaaggtttcatgtggctactatagaagggaaaagtcaaactcc 381

                                                                       
Query: 68  gtcttgcatcaaaattaagattctttatatatttctactaacaaggacatcaactccgtt 127
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcttgcatcaaaattaagattctttatatatttctactaacaaggacatcaactccgtt 321

                                                                       
Query: 128 ttagttggtaatcctgagggtggctgttggtctcaaccatcttcccttttataaggcaaa 187
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagttggtaatccagagggtggctgttggtctcaaccatcttcccttttataaggcaaa 261

                                                                
Query: 188 ctgacttttagtaaagctgtctcatatgttggcccatcaatcagcatggcaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgacttttagtaaagctgtctcatatgttggcccatcaatcagcatggcaca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)