BAC Information

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BAC

Clone NameMSMg01-097M23
Chromosome15 (Build37)
Map Location 40,087,957 - 40,088,084
singlet/doubletsinglet
Overlap geneLOC670013
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097M23.T7 (MSMg01no097_m23.b1)MSMg01-097M23.TJ (MSMg01no097_m23.g1)
ACCAG314147AG314148
length7031,608
length of high quality
(start - end)
128 (105 - 232)---
definitionCHROMAT_FILE: MSMg01no097_m23.b1 PHD_FILE: MSMg01no097_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:40 2005CHROMAT_FILE: MSMg01no097_m23.g1 PHD_FILE: MSMg01no097_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTATTATCGGGAGAGGATCCGCGGAATTAAGTGATTTTGATCTATNACAA
AATCAAAATATTCATGAAACACAATGATATCTCCCCAAATGAGCCGGGCA
GTCATTAATTTTGAAATTCGGGTAATTTATTAACACTTATCTGAAACTGT
AAAAGCTTACCTCTGTGTTTGTAATACGGAGAAAAGTGAAAGCAGTTTTA
AAACTGATTCCTAATGATTTATAATGGTTTGCAGCAAATTGAGTTAGAAA
TTCAATTAAAATGTATGTCTAGTTTTGTTTCAAGATCTTTAGTTTTTTTT
TTTATTAAAATTATATTTAATTCTTGAATTTTTTGNATGNGTTTCCCCCC
CCCCCCCCGAAATATAATATTATTTTATGATTTATTGTTTGGNNTAAAAT
TTNTGATTTTNAAAAGGGGGGTTTGGAGGGGGTAGTTNTTTTATGGAGAG
GTTATGAAATTATATGGATATTGGAAGTAAGAATATTAGGAGTGGAATTT
TGTGTGTTGATTATAGTTAATAATATATATAATATTTTAAGGAAAATTNG
AAGTTTATGAAGATATTTGAAAGTGTAAAAAGATTATTAAATTATTTTTT
TTTTGTGAAGATTAATATGTTGTTTTAAGAATTTAAGTGGATATGATATA
TTGGGGGTATTTGTTTTGGGGTGAGTTTTTTTTAAAGTTTGGATTTTAAA
TGG
GGGACGGCGCGACAGNGAGGAGACACGCGCACAGCGCACTCTTTGTAGAC
GATACTACTATCACATGGCGTGANACACACAGTATAGCAACAGCTACACC
GCGTATACGCAACAATATCAGCGGTGCGTCGACATAGTGGTGGGTGCGTC
GCTGTGCCCGCTCGTTTGTTCATACCATATCCTCGCGTGGCGTCGTTGAG
TGCCGTTGATGATGCGGTCGCGAGCGAGTCTTACGTTTACGCTGCGCTAT
ACCACATCTTAGACAATCACACACGCGCATTTTGTCTATATGCGCGTCGC
GGGCGTGTCGTGGCGCGATCGTGAACTTGTTCATTCGAACGCAACGCCTG
CATACTATCTTGTGCNAGTGACTCGGCGTGGTTACGCCTTTGCGTGTGCC
ACCGTTANGCTGGCGTTTACTGTTATGAAATGCGAATGCTTGGATGTCTC
ATCTCGCTGTGAACCGCACGACGTTGTACTCTGATGCTGTGCCCATGTGT
TGCCCTGGTTCTCATATTGTCTGTTCTTGTTGTGTATCGCACAGATCTGC
TATATTTGCGGTTCCGGACACACAATAATATCATCGTCTCTACGTGTTGT
TCTGTGTTAACTGGCGCAGAGCGCGAAGACAAGATATACACTAATAACAT
TAGTTTGTGCTGGTGGTCCCCGTTCTGACTCTGTTGCGCGCGCGTCGTGT
GATAACATACACCGGTGTAGAGATCGCGGTATATATATATAGACTATTTT
ATATACGTCCCCACTGCGCTCGTCTCTACTACACCGGCTCCCGCATCTAT
ATGTGTCATATATACACGCTATCAGTCGCATTGTCATATGACGCCACGTG
ATATTATCGTTGTTGTCTCCGTCGTGCTCTGTGCCGCCTGCTCCGTATTT
TTCGCGCGCTTGTCTATGTGCGCCGNCATCATATATATCACGCAGCAATA
TTATACGACGTAGTCGTGGTGTGCCGCGTCGCACCAGAATTGTATATTGA
TAGTAGCTGTGTTGTACTCTCTCTATTGTGTCTTATCATCTGTGCACGCT
TGTTGTATAACACTGCTGATCTGCGCGTGTCGTTTGTCACGTGTCCGCTA
TCGTGTATCATCCGTATCGCGTGCCGACGTCGCGGCGTGATCACAAATAT
TAACNCTATNCAGCGTNTGTACATGTTGTCGATGTCTCATCTGCCGCGCC
GCACGCGCTTTATTACATACAAACGTCGTCGGTCGATGTGGTAGCNTAGT
TTCGCGTTACGCACACTATATCATGCCGCTGTGGGCGGNCGATGGTGATG
CGTGCGTANCTCATGATATCACTTTAATTATAGAGCGCGCGTACTCTGGT
GTGTATTGATTGACATTTATATATGTAGCACATCGCGCGCGCGGCTACCA
CGTATTATCCACGCCACCACTNTCTCTCGATCTTTGATGCAGTGATNCAT
GCATATACGCGAGGCGCAGTATTACGCTGGATGTATGACTATTGATCTCA
TCGGTATATATACATACGATACTACATATGNCGTGCTGGCAGCCGCGCGC
TGCGCACGTCANTATATACTACTGTCGGTCTGTTGTGCGATGATATAAGG
TATATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_m23.b1 MSMg01no097_m23.b1 CHROMAT_FILE:
MSMg01no097_m23.b1 PHD_FILE: MSMg01no097_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:40 2005
         (128 letters)



>mm_chr15_40087757_40088284
          Length = 528

 Score =  248 bits (128), Expect = 1e-70
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattttgaaattcgggtaatttattaacacttatctgaaactgtaaaagcttacctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattttgaaattcgggtaatttattaacacttatctgaaactgtaaaagcttacctct 260

                                                                       
Query: 61  gtgtttgtaatacggagaaaagtgaaagcagttttaaaactgattcctaatgatttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttgtaatacggagaaaagtgaaagcagttttaaaactgattcctaatgatttataa 320

                   
Query: 121 tggtttgc 128
           ||||||||
Sbjct: 321 tggtttgc 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)