BAC Information

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BAC

Clone NameMSMg01-099E15
Chromosome15 (Build37)
Map Location 54,752,256 - 54,752,429
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2
Downstream geneLOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp, Sntb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099E15.T7 (MSMg01no099_e15.b1)MSMg01-099E15.TJ (MSMg01no099_e15.g1)
ACCAG315260AG315261
length714715
length of high quality
(start - end)
77 (76 - 152)174 (55 - 228)
definitionCHROMAT_FILE: MSMg01no099_e15.b1 PHD_FILE: MSMg01no099_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:41 2005CHROMAT_FILE: MSMg01no099_e15.g1 PHD_FILE: MSMg01no099_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGGACGGCGGA
ATTCTTAGAAATGCCAAAAATACTAAACAAAGAAGAAAAGGAAATCTGCA
AAAAAGTAGAGATTTAATAAATAACAATACAAACAACTCCCCCCCCACAC
ACATACTAAAATACTAGGTCCAGAAAGCATCACTGGAAAATTCAAATATT
CAAATAAAAACTAACACAAAGCTAGGTTGCATAACACAAGCTTGTAACTC
TAGCTGTTCAGAAGGCTGAAGCCCACAAAGGCCATAAATCCAAGGCCCGT
TTGCAATATATAGTGAGTTATTTTTTTATTCCAAAATAGACTTAAATAAT
ACTCACACATTTATATGTCCCCACAATGGAGGAGAGCATCTGTCCAATAA
ACAAACAAACCCAAGAATATTCTGTTTCACAACTCTATTAGCCCACACCA
TGCTTTTAGCAGAGGTTTGGGGAGAAATAAACCGACCTAAATACCCGTGT
TTATAACAATCTTTATTCCCACACTGTCATATACCACCCCCGTAATCCTT
CTCCGAATTTTACTTTATTGCCGCGTTTTCTCACCAGGCTATTCCCCCCG
GCTACCACTGTGAAAATTTCTCCCCATTCGCTTGCCCTTTTTCCCACCCC
TTTTTCCATTCCCGTGTTCTTTTTTCACATCCACAATTTTTCTTTCTTAA
CCTTCTATTTTTCG
GTTGGCCGCCTGGTTCCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCAGCCATTGCCACTTTCAAGCTAAATTCAAGGCTAATGAAGCT
CCCTCCCCTACTGTCCTTTATGCCTGCGTCCTACCCCACCCCCACTCCAC
AGACAAGCTTACTTTTGTCAGGAATGGATAGAGACTGGAATGATATTGTC
TGTTTCTCATACTCAGAAGGTCTTTATGCAGCTTATGCTGGCCGCCCCAG
TATTTTGATAAAAGTTACTAGCGTAAAATTCACCACCATGAAGGGAAAAT
AATGTTATCTCTCGTGTGAGTTGCAATTTTGGACGCTCCCATTGTGTGCC
TTTTTCACGCAATCCCAATTATCTGACAATGTATTTATATAGATACAGGC
TCATTCCAACTGCCTCACCACTACCCCAATGGTAAAGACAGAGATTTGTT
TGGTTTATAAATTGTACTCCCCCCCCCATCTTGTTTAAAACAAACCCTGA
AGTTGGTTGTTTTGAGGACATCCCACAACTACTTAGCAAACGCTTCTTAG
CTTGATTCTTACATCCTGTGTAGCCCCTCATTCCCTTTTCCTCCCTCCCT
TTTTATATTTGCCCTCCCCCTTTTTGACCTCACCCACCGTCTTTCGAGAA
GCTAATTAATTTTCACATTTCTCACCATGCCCCCTGTTTATTGTCTCTCC
CGCTTTATTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_e15.g1 MSMg01no099_e15.g1 CHROMAT_FILE:
MSMg01no099_e15.g1 PHD_FILE: MSMg01no099_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:41 2005
         (174 letters)



>mm_chr15_54752056_54752629
          Length = 574

 Score =  313 bits (162), Expect = 3e-90
 Identities = 171/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcagccattgccactttcaagctaaattcaaggctaatgaagctccctcccctactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgcagccattgccactttcaagctaaattcaaggctaatgaagctccctcccctactgt 315

                                                                       
Query: 61  cctttatgcctgcgtcctaccccacccccactccacagacaagcttacttttgtcaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 314 cctttatgcctgcgtcctaccccacccccactccacagacaagctgacttttgtcaggaa 255

                                                                 
Query: 121 tggatagagactggaatgatattgtctgtttctcatactcagaaggtctttatg 174
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 254 tgggtagagactggaatgatattgtctgtttctcatactcagaagggctttatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)