Query= MSMg01no100_d19.b1 MSMg01no100_d19.b1 CHROMAT_FILE:
MSMg01no100_d19.b1 PHD_FILE: MSMg01no100_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:02 2005
(478 letters)
>mm_chr15_26564318_26565196
Length = 879
Score = 824 bits (426), Expect = 0.0
Identities = 462/474 (97%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 6 gaattctacacctacctgtctcttgtag-acattatatatttctgcatagactatgtatt 64
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacacctagctgtctcttgtagtacattatatatttctgcatagactatgtatt 265
Query: 65 taaattgctatatcgcaaaatacactgagaactttgctggacaaggggaaggtcttattc 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 taaattgctatatcgcaaaatacactgagaaatttgctggacaaggggaaggtcttattc 325
Query: 125 atcattcatttagcccagtggtaatctgtctcattccatggtgactttaaaaattagtcc 184
||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 326 atcattcatttagcccagtggtaatctttcttattccatggtgactttaaaaatgagtcc 385
Query: 185 taaatatatttgcttgtcagtgcatggggaaatgtgtgattatctgacacaaactctggc 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 taaatatatttgcttgtcagtgcatggggaaatgtatgattatctgacacaaactctggc 445
Query: 245 caatgggattgtatcgatgcatcgagttatacgaggtctgctgcatattatcatacagaa 304
||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 caatgggattgcatggatgcatcgagttatatgaggtctgctgcatattatcatacagaa 505
Query: 305 cttccatttacttagaatagtaatttgcaggaagaacatttcgtcttctccaaaggcaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttccatttacttagaatagtaatttgcaggaagaacatttcgtcttctccaaaggcaac 565
Query: 365 acagacaattggaagtgcagaagagcaccccatagtacaatgccaagcacattctctcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 acagacaattggaagtgcagaagagcaccccatagtacaatgccaagcacattctctgag 625
Query: 425 caaagaggtgatgtgccaaccttccaggttccactgctgtagagggtattaatg 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 626 caaagaggtgatgtgccaaccttccaggttccactactgtagagggtattaatg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space: 406692
Effective search space used: 406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_d19.g1 MSMg01no100_d19.g1 CHROMAT_FILE:
MSMg01no100_d19.g1 PHD_FILE: MSMg01no100_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:02 2005
(491 letters)
>mm_chr15_26694721_26695611
Length = 891
Score = 942 bits (487), Expect = 0.0
Identities = 490/491 (99%)
Strand = Plus / Minus
Query: 1 ctttcatgatgggaaagctattttgtattttcttatatcgtcttaaaaaatatcttcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctttcatgatgggaaagctattttgtattttcttatatcgtcttaaaaaatatcttcttc 632
Query: 61 accctttgtcttcttcacactagtcttacttggttgtattctataagaagctctacagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 accctttgtcttcttcacactagtcttacttggttgtattctataagaagctctacagag 572
Query: 121 agagccttctgccaataatacaatgaattagtcatgctgtttccttgaaaataacaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agagccttctgccaataatacaatgaattagtcatgctgtttccttgaaaataacaaggt 512
Query: 181 aactgctgaacctttctttccagcatggaattttggcttatttagagctttctccctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aactgctgaacctttctttccagcatggaattttggcttatttagagctttctccctcct 452
Query: 241 accaaccatggaccggtaattgctttattggtatttctgagaaaattttggagggaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 accaaccatggaccggtaattgctttattggtatttctgagaaaattttggagggaatga 392
Query: 301 ggcttaatggggttggtaactgtgaaaggaaggcaccacatcacagatcataatctatta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 391 ggcttaatggggttggtaactgtgaaaggaaggcaccacatcacagatcataatctatca 332
Query: 361 gtatggctggctgaccctagcacttctatttaaagtgaggatgatagagtcagctttaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtatggctggctgaccctagcacttctatttaaagtgaggatgatagagtcagctttaag 272
Query: 421 tctcagataaattaaaggtatgatgtttgtcacaatataaagcaaacatacagttattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctcagataaattaaaggtatgatgtttgtcacaatataaagcaaacatacagttattta 212
Query: 481 attttgaatat 491
|||||||||||
Sbjct: 211 attttgaatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
