Query= MSMg01no100_h21.b1 MSMg01no100_h21.b1 CHROMAT_FILE:
MSMg01no100_h21.b1 PHD_FILE: MSMg01no100_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:22 2005
(245 letters)
>mm_chr15_89981008_89981652
Length = 645
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 1 ttgagttgagttggtttactgacctttgggactggataatgaaaaaacaggtgttattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagttgagttggtttactgacctttgggactggataatgaaaaaacaggtgttattta 260
Query: 61 atcatgtgagggcataaacactatttttcatggaaataagaatattatctaatgaaaaca 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatgtgagggcataaacactgtttttcatggaaataagaatattatctaatgaaaaca 320
Query: 121 atgaacattattgaattgactcatgaacctcagtggtattaatattcctattacatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaacattattgaattgactcatgaacctcagtggtattaatattcctattacatttga 380
Query: 181 gaattaatataatttttaaaaattgtaaaacaaatctgcttctcagatttctatgtatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattaatataatttttaaaaattgtaaaacaaatctgcttctcagatttctatgtatgt 440
Query: 241 gtt 243
|||
Sbjct: 441 gtt 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no100_h21.g1 MSMg01no100_h21.g1 CHROMAT_FILE:
MSMg01no100_h21.g1 PHD_FILE: MSMg01no100_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:22 2005
(529 letters)
>mm_chr15_90041219_90042145
Length = 927
Score = 980 bits (507), Expect = 0.0
Identities = 523/529 (98%), Gaps = 2/529 (0%)
Strand = Plus / Minus
Query: 1 ttaaaacgccgacttccgctgccctcccgccccccaccccacagctaattgaagagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttaaaacgccgacttccgctgccctcccgccccccaccccacagctaattgaagagatgg 668
Query: 61 actagatattaggaagattggaacttgatgagagagcttaacatggtgcaatcagtgcct 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 actagatattaggaagatgggaacttgatgagagagcttaacatggtgcaatcagtgcct 608
Query: 121 tctgcccaaaaatacataagtaatttagcctataaaatagtctgttgacgcatgaataat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctgccccaaaatacataagtaatttagcctataaaatagtctgttgacgcatgaataat 548
Query: 181 gagttttctgtttgacgtgttcccggtaaatatttaatgaatttctgttgctcttaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagttttctgtttgacgtgttcccggtaaatatttaatgaatttctgttgctcttaatat 488
Query: 241 tgctttaaataacatttcatgggaaacgaatgccgcctcattaaaataaggaagtaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgctttaaataacatttcatgggaaacgaatgccgcctcattaaaataaggaagtaaact 428
Query: 301 agaacggagggcactctattaaagattataacagtgttttgattagcaaatgaatcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaacggagggcactctattaaagattataacagtgttttgattagcaaatgaatcattt 368
Query: 361 aaaaactccacattattaactcgaggtcacagcaccacaaattgacttggttcatttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaaactccacattattaactcgaggtcacagcaccacaaattgacttggttcatttatt 308
Query: 421 ttgaagaataatttttttttttgctttcattatttgtgacaggttaaactaggaccaaca 480
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttgaagaataaatttttttt--gctttcattatttgtgacaggttaaactaggaccaaca 250
Query: 481 aatttattacatcgtttggagagtttaatcaaatccgtgctttgagata 529
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 249 aatttattacatcgtttggagagtttaatcaaatctgtgctttgagata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 927
Length adjustment: 10
Effective length of query: 519
Effective length of database: 917
Effective search space: 475923
Effective search space used: 475923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
