BAC Information

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BAC

Clone NameMSMg01-100L23
Chromosome15 (Build37)
Map Location 20,066,904 - 20,067,097
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100L23.T7 (MSMg01no100_l23.b1)MSMg01-100L23.TJ (MSMg01no100_l23.g1)
ACCAG316357AG316358
length749854
length of high quality
(start - end)
194 (57 - 250)34 (170 - 203)
definitionCHROMAT_FILE: MSMg01no100_l23.b1 PHD_FILE: MSMg01no100_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:43 2005CHROMAT_FILE: MSMg01no100_l23.g1 PHD_FILE: MSMg01no100_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGGAA
CACCTTGGCTAAGTTGACTATGGACCATCTAGTATGGTGTTATGTTGAAA
GACTATGGCAATGAATAAAATAGAAAATGATCAAGAAGTCTCCTGATATC
AAGCCCAAACCTCTACATTTGTGGCACATCTATATAAAAACCTGCACACC
ACATGTGTATCCCTTATATGGAAACATGTATACAAACGTACCACACATGC
ACATAATTTGTAAAAGAAAGATATTCAGCCTCCATGGTTAACAAGGNTTT
TCTACTACCAGTAAAAAAAGTATTTCCTCTCTAAATTATTTGCCAATTAA
TATTAAAACATATAACTATGCATCTATTGATTTTGAACACCACTGTATTA
TCGCCCATATATTTTTTTATACCCCTCTCTCTAATTAAATTATCCTCCCA
CCCAAAAAATACCCGCGTGTCTTTTTTTTGAACCCCTAAAACAATCCACT
TCCCCAACTTATAATACTAAAATACTATTTCTATAATATCTCAAATTCTC
TACCTCCTCACCCGTCTTCAATCACCCCCCACTCTCTCCTCCATACTAGT
TCCAATAACTCAGTTTTCAATAGCATATACTAACACTTGCTTACACTTCT
ATAACATTTATATATCATAACCCCTTTATTTACAACGCGCGTCATCATCT
CTACCACTTCAAACTTAACCACTCAAATAAACACCTACTCCTTTTTACT
TGGGGGTTGTTNNNNTTGTCCTTTTCTTTTCTCCTTTCCCCCCCCAACTN
CCNCCCGATGCTATGGGTAGGCCTGGGGGCGCCGGTTCCGACCTGCAGGN
GAACNANAGAATAACAGCACCGGGCACTTAGAAGGGGAAGAACTAGNCAT
AGAAAGCGACAGAGGGACAGAACTGGGNGGGAGAAGGGATGGGGAGGAGA
ACCGCCACCCGGCGCCAACAGCCACCAGGCCCCCACCGCACCACCCCACC
CAACAGCAACGACCCCCGACAGCCAAAACGCAGCAGCGCACCCCCAACCC
TTTTTTTTTTAACTCTGCGCAGCCCTTCCCCACCGTGATATTGTGCCCCG
CCGGACAACGCCCCAGGGACAGTTTTCCCTCCTTTTACCCCACCACCCGC
CCCGGCGCGAAAAAGAGGTTTTTTTTTCCTCCCCCCCCCCCCCCCCGGGG
GTTAGTGATTTTGATGATCGGGGTTGGTTGTCCCCCCCCCCAAAAATAAT
AACACCTCCTGGGGGGGGGCGGGGTCCCCATCTCCCGTCCCCCTACGTTC
TCTTTATTATGGGCTTCTATTTCTCATATACTTTCATATACGCCTTCTTT
TCTTCCCCCTTTTATTTCTTTCGTCCCTTACTCCAACTCGTCCCCTCCTT
CCGCATTTACCCCTCCCCTCAATCATCCCCACTTTTTATTTTTCCTCTCT
TATTCACGTCTGCTTCCGCAGTATCGATTATTTTTCCAGCCCCCTTCCTG
CTGTAGCCAACGGCCACCAAGCCCTTTTTTTCTTTTCTCCCCAAACACAC
AGAGAGACCGGTCCCCCCTCCACCCACCCTTATATTACGTTGCCCGCTCC
TCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_l23.b1 MSMg01no100_l23.b1 CHROMAT_FILE:
MSMg01no100_l23.b1 PHD_FILE: MSMg01no100_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:43 2005
         (194 letters)



>mm_chr15_20066704_20067297
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctaagttgactatggaccatctagtatggtgttatgttgaaagactatggcaatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctaagttgactatggaccatctagtatggtgttatgttgaaagactatggcaatgaat 260

                                                                       
Query: 61  aaaatagaaaatgatcaagaagtctcctgatatcaagcccaaacctctacatttgtggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatagaaaatgatcaagaagtctcctgatatcaagcccaaacctctacatttgtggca 320

                                                                       
Query: 121 catctatataaaaacctgcacaccacatgtgtatcccttatatggaaacatgtatacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctatataaaaacctgcacaccacatgtgtatcccttatatggaaacatgtatacaaa 380

                         
Query: 181 cgtaccacacatgc 194
           ||||||||||||||
Sbjct: 381 cgtaccacacatgc 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)