BAC Information

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BAC

Clone NameMSMg01-100N01
Chromosome15 (Build37)
Map Location 102,326,963 - 102,327,336
singlet/doubletsinglet
Overlap genePcbp2
Upstream geneKrt85, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13
Downstream geneMap3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N01.T7 (MSMg01no100_n01.b1)MSMg01-100N01.TJ (MSMg01no100_n01.g1)
ACCAG316405AG316406
length794693
length of high quality
(start - end)		268 (104 - 371)379 (57 - 435)
definitionCHROMAT_FILE: MSMg01no100_n01.b1 PHD_FILE: MSMg01no100_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:49 2005CHROMAT_FILE: MSMg01no100_n01.g1 PHD_FILE: MSMg01no100_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCCCCCNTTTTTATCTTTTTTTTATTATACTTCTTCTTCTCCNC
GGACNTTTTTTTCTATAATTGCGGCCGCTATACGACTCCTATTCAAGAGG
ACCGCGGAATTATCACCTTCCCGCTTCAGCCTCCTGAGTGTTGAGATTAC
CGAGTCTACTTGTCATGTTTGAAGCAAAGAATCAAGTCTAATACGCACGG
ATGATGTGTCTGCCTTTCTTCCTTCCTTCCTTTCTTTTTCTCTTAAAGAT
TTTTTTTATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTTGAGACAGGCTTTCTTTTTTTATTTTTTATT
TTTTTTGGTTTTTTGAGACAGGGATTCTTGTTGTACCCCTGATTGATTTT
GTCCTCATTTTGTATAACAGACTGCCCCGAAACTCATAATATCTCCTGCT
TCTGTTGTTTATTTAAGATTTCCACTATAAATCCTTTATTTCTCGTCTCA
CATCTTACTTCTTTTTTCTTCCTCTCTTTTATTCCTTATCCTACTTCATC
ACTACTCCTTCTGATTTCCCCTTTTTCTCTTCCCCTCCTCACCCTATTTT
TTCGATCTACCCCAACTCGCCCCTTATTTATTCACTCCCTCCTCTAATTT
TATTTTTTCCCCCCTTCCCCTCCTTCCCCCATATATATATCCCTCGACCT
TTTTTGCCCCCATGTTCTCCTTTAAACACAGCGCCCTTTATTACCCCTTT
TTCTCCCTTTTTTATCCTCTTTCCCCTCCCCTCTTCTTTATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTAGAAACTGGAAAGTCAGCTTTTTTTTAGTGATCAAAAGGACT
ATCTGAAACCAAGTGGAAGACAATGACAACCTCCACTTGTACACTTATGG
TACACACCTAGGCCCACACATGGACCCATGAACAACAACAAAACACGAAC
GCAGCAGAATCTTGCCTATCTCAAAATAGGATGACCCAATGACAAGGTAA
ATAAGCTTTAGGGACTCAAGATATTGCTCAGTGGTTAAGGACACTTGTTG
CTCTTGTAGGGAATCAGATTTTATTTCTAGAACCCACATGGTGGCTCACA
AATATCTGTGATTCCAATTCTATGGGATCCAACATTTTCAGGTCTCCAAA
GGCCCTACATGTATTATTCAGCAAACTGAATAACAAGAGACCAGTGGGAA
AGAAAGTTTCAATGTAAATGGTTTGTTTTAATCTAGTATTTCAAAAAACA
ACCATATAGGGCAGTAGTACAGTGGCCATATAAACAGCTCAAGAACTATC
CAGTACTCATAATAAAGCTTTATCAGGAATTTAAAGAGCAAGATGAACTA
AATGAGTTACAGAGGGAAATCTCCACCCAGAAATGCAATGACTTTTGACA
TCAGACTCATTATAGGAATCATCAAGCTCTTAAATATTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n01.g1 MSMg01no100_n01.g1 CHROMAT_FILE:
MSMg01no100_n01.g1 PHD_FILE: MSMg01no100_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:49 2005
         (379 letters)



>mm_chr15_102326936_102327711
          Length = 776

 Score =  692 bits (358), Expect = 0.0
 Identities = 372/378 (98%), Gaps = 5/378 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaactggaaagtcagc-ttttttttagtgatcaaaaggactatctgaaaccaagtg 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctagaaactggaaagtcagctttttttttagtgatcaaaaggactatctgaaaccaagtg 342

                                                                       
Query: 60  gaagacaatgacaacctccacttgtacacttatggtacacacctaggcccacacatggac 119
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 341 gaagacaatgacaacctccacttgtacac-tatggtacacacctaggcccacacatggac 283

                                                                       
Query: 120 ccatgaacaacaacaaaacacgaacgcagcagaatcttgcctatctcaaaataggatgac 179
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccatg---aacaacaaaacacgaacgcagcagaatcttgcctatctcaaaataggatgac 226

                                                                       
Query: 180 ccaatgacaaggtaaataagctttagggactcaagatattgctcagtggttaaggacact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ccaatgacaaggtaaataagctttagggactcaagatattgctcagtggttaaggacact 166

                                                                       
Query: 240 tgttgctcttgtagggaatcagattttatttctagaacccacatggtggctcacaaatat 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 165 tgttgctcttgtagggaatcagattttatttctagaaccgacatggtggctcacaaatat 106

                                                                       
Query: 300 ctgtgattccaattctatgggatccaacattttcaggtctccaaaggccctacatgtatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ctgtgattccaattctatgggatccaacattttcaggtctccaaaggccctacatgtatt 46

                             
Query: 360 attcagcaaactgaataa 377
           ||||||||||||||||||
Sbjct: 45  attcagcaaactgaataa 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 776
Length adjustment: 9
Effective length of query: 370
Effective length of database: 767
Effective search space:   283790
Effective search space used:   283790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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