BAC Information

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BAC

Clone NameMSMg01-101N16
Chromosome15 (Build37)
Map Location 50,526,268 - 50,526,519
singlet/doubletsinglet
Overlap geneTrps1
Upstream geneLOC665160
Downstream geneLOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N16.T7 (MSMg01no101_n16.b1)MSMg01-101N16.TJ (MSMg01no101_n16.g1)
ACCAG317155AG317156
length733732
length of high quality
(start - end)
692 (42 - 733)251 (71 - 321)
definitionCHROMAT_FILE: MSMg01no101_n16.b1 PHD_FILE: MSMg01no101_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:14 2005CHROMAT_FILE: MSMg01no101_n16.g1 PHD_FILE: MSMg01no101_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
CTGATATTTTCCAACTTTTATTATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAAACTACTTGGTTAGGATGGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCAAGAATTTTATTAAGGATTTTTGCATCGATA
TTCATAAGAGAAATTGGTCTGAATTTCTCTATCTTTGTTGGATCTTTCTG
TGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAG
TACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGA
TCTTCTTTGAAGGTCTGATAGAACTCTCCCCTATACCCGTCTGGTCCTGG
GCTTTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGG
GGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATCCAACTTTGGTA
CCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGGTTTCCAGTTTT
GTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTC
AGGATCTGCTGTTATGTCTCCCTTTTCCTTTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGGAGAAGTTTAAAATCCTACATGCAT
CCCTTGAAGTGCATGACATACACTCAGAAGCACAAAGTGGCTGTGAGAAA
AGCGTTTCAAGTGTGTCAAATTTAAAGACACCTACCTGAGCATAGAGTTT
GGTAATTGTGGCCTACACTCTCTACCAAAAGCTTAGAGAATATAGACTAG
CAGGAAAGAGGGTATTTTCCCATCTGTTGTCCATTTGGCTGTCAGCACTT
GTTGTGACAGAAGAGAAAAGGATTCTTGAGTGACTGCTAGTCTGTCTTAA
AGTATGGTAATGGGGCTAATTACGACAGATAGGAGCTGACGAGCATTGGT
GGGGGCCATTTTCCCTATCGCTTCTGCGTCACTCTGTATCCTTCTCAGAT
TCCCCTTCTCCAATTTTGTCATTTCTCAAGCAACACCACGTAACGGTACC
TGCTAACACGACATGAGTTGTGTGGTTGAAAGGACCTGCGCTGGACACTG
CTCAAATTTTCTTTACCTGCCTCCCTAAACAAAGATCTGGCGCATGGTTG
AGGCCATGTTTACTGTCTTTGTTCAGCCTAACTGGATGGAAATTAATCAC
GCTTTTTTAATGAGAACCCCATTTTTTTCTTTGGAATAGGTAAACCATTC
TGTTTGCTTCTTTTATGTAAGGCTCCTCGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n16.g1 MSMg01no101_n16.g1 CHROMAT_FILE:
MSMg01no101_n16.g1 PHD_FILE: MSMg01no101_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:14 2005
         (251 letters)



>mm_chr15_50526068_50526719
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%), Gaps = 1/252 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggagaa-gtttaaaatcctacatgcatcccttgaagtgcatgacatacactcagaa 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 452 ttttggagaatgtttaaaatcctacatgcatcccttgaagtgcatgacataaactcagaa 393

                                                                       
Query: 60  gcacaaagtggctgtgagaaaagcgtttcaagtgtgtcaaatttaaagacacctacctga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcacaaagtggctgtgagaaaagcgtttcaagtgtgtcaaatttaaagacacctacctga 333

                                                                       
Query: 120 gcatagagtttggtaattgtggcctacactctctaccaaaagcttagagaatatagacta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcatagagtttggtaattgtggcctacactctctaccaaaagcttagagaatatagacta 273

                                                                       
Query: 180 gcaggaaagagggtattttcccatctgttgtccatttggctgtcagcacttgttgtgaca 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcagaaaagagggtattttcccatctgttgtccatttggctgtcagcacttgttgtgaca 213

                       
Query: 240 gaagagaaaagg 251
           ||||||||||||
Sbjct: 212 gaagagaaaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)