BAC Information

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BAC

Clone NameMSMg01-103F24
Chromosome15 (Build37)
Map Location 30,426,935 - 30,519,016
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103F24.T7 (MSMg01no103_f24.b1)MSMg01-103F24.TJ (MSMg01no103_f24.g1)
ACCAG318257AG318258
length735708
length of high quality
(start - end)
189 (62 - 250)523 (74 - 596)
definitionCHROMAT_FILE: MSMg01no103_f24.b1 PHD_FILE: MSMg01no103_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:17 2005CHROMAT_FILE: MSMg01no103_f24.g1 PHD_FILE: MSMg01no103_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,518,832 - 30,519,016)(30,426,935 - 30,427,457)
sequence
NCTTAATGCGTNCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGT
CGAGAATCCGCGGAATTCTCACATCCCTTTCCGCTATATACTCAATGCCA
GTAGAGACAAGATGACAAGCCAGGAAACAGAACAACCATAAAAAGGGCAC
ATGAATTCAATATTTGCTTTCTTTATCCTAGTCTTTCGACTATTATGGTT
GACATCATTTTATTGCAATTCCCTGATTTAATGAATAGAACATGCTGTTA
AGTAGAAATGCATTTTATGCTTCACAAAGAGAAATTGAGTTGCTATGGAG
AAATATAAACTAAGGCCAGATTAAAATTTTATGGCATGTCTTTTATAATT
CACAAAACCATATATCTTTTATAAACTTCTTTTACATGCCAGCCATTCTC
AAGATTCTCAGAAAGCCAAACCTTTTACGTCATATAACCCTAAATATTTT
TACTGCAAACAGTGCAGAGCTACAAGACTCTTACTGGGTTTTGCCTCCCA
CGACATTATTTCATGACCTTCACTATCGTTACACCCTAATGCCTATGTGC
TGTTCACAGCTTTAACCATCACGTTTGTATCTCAACTATTCCACTCTTCA
TAATTACCTTATTTCGTCCCCTTTATTAAACACGGATAACCCCCCTTTAT
TATCCCTTTTATCCTTTCCTGTTTTTTCTCACGTCTTTCTTTGCTTTTCC
CCTCTGCTGTGCTCGTGTACACATTGTTTCTTGTT
TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATCATCCTTCAGCCACATGTGAGTGAC
AGGTGAAAGAGATGATTGGAAGCTGGATGCTGGATGAGGTCAACGGAGAT
TTTGAAATGTGAGCTCAGCATCTTCAGGAACTCTAGGGAAAGGCCTATGG
GTCTGAACAACTACAGCAGATCACAGACAGGGCCTTGAGGGAAAGATGGG
TGAACATTGATTGCCAGTATAGGGCAACAATTCAGATGCACTTCTTAGTT
ACTCGGAGTGACTTTCACGTCAAAGAATACAATTCATATTATGATATAGT
TCAGGAATATTATTTCTAGCACTTGCCAAAAACTAGAGAGTAGGCCCTGG
TATTTTTATTACTGCGTCGCCCTTCCTTTCTGAGCATAGAACACCAGTTA
AATTGGCCCTAAGTGTTAACCAAACATCTAGACATCTGGGAATAAACACT
CTGTATTAATGGAAAACTGTAACAAATCTTAAATGCAATAGAAGATTTGA
AAAGGCACATGCAACACATCATTTTTATCCAGTTAACATTTAATGTAGCT
ATCCAAGTGAAGAATACTATCATTCTACCAGGAAGGCATTGTACATTCTG
TATGAGAACATCCTTGTTACAAAACACCATCCTGTGAATTGCCAGCGTGC
TCTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_f24.b1 MSMg01no103_f24.b1 CHROMAT_FILE:
MSMg01no103_f24.b1 PHD_FILE: MSMg01no103_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:17 2005
         (189 letters)



>mm_chr15_30518631_30519219
          Length = 589

 Score =  311 bits (161), Expect = 1e-89
 Identities = 179/185 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattctcacatccctttccgctatatactcaatgccagtagagacaagatgacaagcca 61
           |||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattctcacatccctctgggctatgtactcaatgccagtagagacaagatgacaagcca 327

                                                                       
Query: 62  ggaaacagaacaaccataaaaagggcacatgaattcaatatttgctttctttatcctagt 121
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaaagagaacaaccataaaaagggcacatgaattcaatatttgctttctttatcctagt 267

                                                                       
Query: 122 ctttcgactattatggttgacatcattttattgcaattccctgatttaatgaatagaaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 ctttcgactattatggttgacatcattttattgcaattccctgatttaatgaagagaaca 207

                
Query: 182 tgctg 186
           |||||
Sbjct: 206 tgctg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no103_f24.g1 MSMg01no103_f24.g1 CHROMAT_FILE:
MSMg01no103_f24.g1 PHD_FILE: MSMg01no103_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:17 2005
         (523 letters)



>mm_chr15_30426735_30427657
          Length = 923

 Score =  965 bits (499), Expect = 0.0
 Identities = 517/523 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatccttcagccacatgtgagtgacaggtgaaagagatgattggaagctggatgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatccttcagccacatgtgagtgacaggtgaaagagatgattggaagctggatgctgg 260

                                                                       
Query: 61  atgaggtcaacggagattttgaaatgtgagctcagcatcttcaggaactctagggaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggtcaacggagattttgaaatgtgagctcagcatcttcaggaactctagggaaagg 320

                                                                       
Query: 121 cctatgggtctgaacaactacagcagatcacagacagggccttgagggaaagatgggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatgggtctgaacaactacagcagatcacagacagggccttgagggaaagatgggtga 380

                                                                       
Query: 181 acattgattgccagtatagggcaacaattcagatgcacttcttagttactcggagtgact 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 acattgattgccagtatagggcaacaattcagatgcacttcttggttactcggagtgact 440

                                                                       
Query: 241 ttcacgtcaaagaatacaattcatattatgatatagttcaggaatattatttctagcact 300
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 441 ttcacgtcaaagaatacaattcatattatgttatagttcaggaatattatttctagcatt 500

                                                                       
Query: 301 tgccaaaaactagagagtaggccctggtatttttattactgcgtcgcccttcctttctga 360
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 tgccaaaaactagagagtaggccctggtatttttattactgcgccgtccttcctttctga 560

                                                                       
Query: 361 gcatagaacaccagttaaattggccctaagtgttaaccaaacatctagacatctgggaat 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatagaagaccagttaaattggccctaagtgttaaccaaacatctagacatctgggaat 620

                                                                       
Query: 421 aaacactctgtattaatggaaaactgtaacaaatcttaaatgcaatagaagatttgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacactctgtattaatggaaaactgtaacaaatcttaaatgcaatagaagatttgaaaa 680

                                                      
Query: 481 ggcacatgcaacacatcatttttatccagttaacatttaatgt 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcacatgcaacacatcatttttatccagttaacatttaatgt 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)