Query= MSMg01no104_d05.b1 MSMg01no104_d05.b1 CHROMAT_FILE:
MSMg01no104_d05.b1 PHD_FILE: MSMg01no104_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:23 2005
(657 letters)
>mm_chr15_33974466_33975522
Length = 1057
Score = 1199 bits (620), Expect = 0.0
Identities = 646/656 (98%), Gaps = 7/656 (1%)
Strand = Plus / Plus
Query: 6 gaattcatatac-taacca--aaataaataaatctttaaaaaaaag-acaggacactgat 61
|||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 gaattcatatacataa--aataaataaataaatctttaaaaaaaagtacaggacactgat 261
Query: 62 ttgggtggctcacacctttaatcacagaactcagaaggctgaaggaggggaatctctttg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgggtggctcacacctttaatcacagaactcagaaggctgaaggaggggaatctctttg 321
Query: 122 agttccaggaagccaggattagctagtgaggctgtctaaaataaataataccacttaacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agttccaggaagccaggattagctagtgaggctgtctaaaataaataataccacttaacc 381
Query: 182 atgttattgtgaagatttcatggggtctccaggaaagggcccaagaacagtatctgacat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgttattgtgaagatttcatggggtctccaggaaagggcccaagaacagtatctgacat 441
Query: 242 actgacatatagtatagcaagctctcagtagcttttagctaccaatagtatgtaatctca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgacatatagtatagcaagctctcagtagcttttagctaccaatagtatgtaatctca 501
Query: 302 ttgccttttatttattatttcaaaatagggtttctctgtatactagccctggctttccta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgccttttatttattatttcaaaatagggtttctctgtatactagccctggctttccta 561
Query: 362 gactcactttgtagaccaggctagcctcaaactcacagaaattcccctacctctgttgag 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 562 gactcactttgtagaccaggctagcctcaaactcacagaaattcccctgcctctgttgag 621
Query: 422 attaaaggtatgcactaccatgcttaacctctcattaccttttaaaagtaacatatatag 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attaaaggtatgcactaccatgcttaacctctcattaccttttaaaagtaacatatataa 681
Query: 482 gtatgtatgaatgtatgtatgtatgtatttgaacatgagaactctctaggaaaaaaatat 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 682 gtatgtatgaatgtatgtatgtatgtatttgaacatgagaactctctaggaaaaaa-tat 740
Query: 542 ggaattgttttgagatctggttaatatagtagcacacagttttgtgatcatttcagagga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattgttttgagatctggttaatatagtagcacacagttttgtgatcatttcagagga 800
Query: 602 aattctgatggtgatgctgtacattcagacgctaagcacaggtacagaacaatgac 657
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 aattctgatggtgatgctgtacattcagacgctaagcacaggtacggaacaatgac 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_d05.g1 MSMg01no104_d05.g1 CHROMAT_FILE:
MSMg01no104_d05.g1 PHD_FILE: MSMg01no104_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:23 2005
(465 letters)
>mm_chr15_34060405_34061270
Length = 866
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 1 tccttagtctctttaac-agtatttaccttttgatcattagaaattggttcctgggactt 59
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcctcagtctctttaacaagtatttaccttttgatcattagaaattggttcctgggactt 607
Query: 60 cagaagtgaagctctatcttcatctacccagttcccccactcctctgctggtgcattcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cagaagtgaagctctatcttcatctacccagttcccccactcctctgctggtgcattcca 547
Query: 120 gtctgagctagggtcagcagaagacaaaccatctaaaaaataataatttcaattagttat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtctgagctagggtcagcagaagacaaaccatctaaaaaataataatttcaattagttat 487
Query: 180 ctgtcatttttccagaagctaaaatccaaacactaaaagttctttatatggaattaagct 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgtcattttgccagaagctaaaatccaaacactaaaagttctttatatggaattaagct 427
Query: 240 gtagttttaaactattattcttttccctgagcatattttaagagctaggaaaaagtgaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtagttttaaactattattcttttccctgagcatattttaagagctaggaaaaagtgaaa 367
Query: 300 acattgtccaaatgttgctaagcacaagatttagtggaatttttagacataccacaaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acattgtccaaatgttgctaagcacaagatttagtggaatttttagacataccacaaaac 307
Query: 360 atatttattagttattaatgttactctcctttgtcagtcttcttaatcttcactttttcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atatttattagttattaatgttactctcctttgtcagtcttcttaatcttcactttttcc 247
Query: 420 tctgtctatttttaacctggccatatttttataccaatttattttt 465
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctgtctatttttaacctggccatatttttataccaatttattttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space: 389480
Effective search space used: 389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
