BAC Information

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BAC

Clone NameMSMg01-104G06
Chromosome15 (Build37)
Map Location 30,627,340 - 30,787,258
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G06.T7 (MSMg01no104_g06.b1)MSMg01-104G06.TJ (MSMg01no104_g06.g1)
ACCAG319015AG319016
length677662
length of high quality
(start - end)
393 (55 - 447)336 (78 - 413)
definitionCHROMAT_FILE: MSMg01no104_g06.b1 PHD_FILE: MSMg01no104_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:38 2005CHROMAT_FILE: MSMg01no104_g06.g1 PHD_FILE: MSMg01no104_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,627,340 - 30,627,728)(30,786,923 - 30,787,258)
sequence
CAAAAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCCCTGCCAGTAACCCAAGGTGCCCCGGCCTTGTT
GGAATGGATGCCGTCTAGTGTCCCATTATTGTTTGCTAAAATGAAGTAGC
CACAGGAGATGTGTTCAAATACCTCCCAGATTCTTTGTCCAGTCAGACAC
CGGCCTTTCTGACAGTTATTGAAGCTAATGGGGAAAGCTCCTTCGGTAAT
TTTTAGCAAGAAATAACTGGGCCTGCCTGTGATCATTGACTCAAGTTTTC
ACTTTAAGGTTTGCCTTGCTGTTCCAGTGTTAACTGGGGGAATAGTACCT
TAAACACCTAGGAATGTGTTCTATTTCATAGACTATGGTGATGGAGCCAA
AGTCTATATTATTGTTTCGGTTCCATGGGTGTTTGCCTTGCCAATTTCAG
CAATGGGTTACCAGGATCTGCTGTGAATCCCCTTATACACAGAATCAAGT
TCAGACATTCCAAGCTCCGGTGACAATCCAGATCATGTCAGAACACACCC
ATGGCTGTGGAGCGAAATCTTCTCATATGCCTCAAATATTTGACCCTTTT
CTAGAATAAACTCTATGACATAGTTGGAAGATAACCCGTCCCCCAGTACT
AGGCCTCATGATGAATTTCCCACCAAC
TTCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCTCCAGTCAGTGCCTCTG
CGGCATCATGTCTTTCGTGCTGCCACAGAGCTTGTTAATGGGGAATAATG
ATGCATCTGCACCTCCCGGGGACAATAATGAAGGACATGGGTTAATCGGA
AGTCCCAGCATGTCTGTCCCCTTCCATAGCAGTCCAAGAGACTGAGAAGT
ACATTCACAACACAGACAGAAAAGTACAGGGTCCCACCAATAGGAGGAAG
AAAGTATCAATGTATTACCTTATCCATAAATATTGTTACTTGCTTTTTTT
TTTTTACCCAATTACACTTAAGTATTGTTATTTAACTCTTCCAGAAGACA
ATGACCTTGTGCATCCATTATACAGCCTAGATAGGACGACCCTCCTGTTG
GCTCACCTTCACTTCAAAAAAAGTCTTTAATTAGTACTTCCAGAATCTTT
TCTGCATAATTTCCAGACCAGAATTAAGAAATGTGTGTAGGCCCACAGCC
AATCCTTAGGTAGAGCTTGGTCTACCCTGCTGAAGAGGGACAGGAAGGAT
ATAGTAATCAGAGGGTCGTAGGCTCCCCTGATAACTGGCCTAAAAAATCA
CTATTGGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g06.b1 MSMg01no104_g06.b1 CHROMAT_FILE:
MSMg01no104_g06.b1 PHD_FILE: MSMg01no104_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:38 2005
         (393 letters)



>mm_chr15_30627136_30627928
          Length = 793

 Score =  690 bits (357), Expect = 0.0
 Identities = 381/389 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccctgccagtaacccaaggtgccccggccttgttggaatggatgccgtctag 64
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattctcccctgccagtaacccgaggtgccccggccttgttggaatggatgccatctag 264

                                                                       
Query: 65  tgtcccattattgtttgctaaaatgaagtagccacaggagatgtgttcaaatacctccca 124
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tgtcccattactgtttgctaaaatgaagtagccacaggagatgcgttcaaatacctccca 324

                                                                       
Query: 125 gattctttgtccagtcagacaccggcctttctgacagttattgaagctaatggggaaagc 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattctttgtccagtcagacactggcctttctgacagttattgaagctaatggggaaagc 384

                                                                       
Query: 185 tccttcggtaatttttagcaagaaataactgggcctgcctgtgatcattgactcaagttt 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccatcggtaatttttagcaagaaataactgggcctgcctgtgatcattgactcaagttt 444

                                                                       
Query: 245 tcactttaaggtttgccttgctgttccagtgttaactgggggaatagtaccttaaacacc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tcactttaaggtttgccttgctgttccagtgttaactgggggaatagtaccttagacacc 504

                                                                       
Query: 305 taggaatgtgttctatttcatagactatggtgatggagccaaagtctatattattgtttc 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 taggaatgtgttctatttcatagactatggtgatggagccaaaatctatattattgtttc 564

                                        
Query: 365 ggttccatgggtgtttgccttgccaattt 393
           |||||||||||||||||||||||||||||
Sbjct: 565 ggttccatgggtgtttgccttgccaattt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no104_g06.g1 MSMg01no104_g06.g1 CHROMAT_FILE:
MSMg01no104_g06.g1 PHD_FILE: MSMg01no104_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:38 2005
         (336 letters)



>mm_chr15_30786723_30787458
          Length = 736

 Score =  565 bits (292), Expect = e-165
 Identities = 325/336 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagctccagtcagtgcctctgcggcatcatgtctttcgtgctgccacagagcttgtta 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 536 attagctccagtcagtgcctctgcggcatcatgtctttcgtgctggtacagagcttgtta 477

                                                                       
Query: 61  atggggaataatgatgcatctgcacctcccggggacaataatgaaggacatgggttaatc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 476 atgggggataatgatgcatctgcacctcccggggacaataatgaaggacgtgggttaatc 417

                                                                       
Query: 121 ggaagtcccagcatgtctgtccccttccatagcagtccaagagactgagaagtacattca 180
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 416 ggaagtcccagcatgtctgtccccttccgtatcagtccaagagactgagaagtacattca 357

                                                                       
Query: 181 caacacagacagaaaagtacagggtcccaccaataggaggaagaaagtatcaatgtatta 240
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 356 caacacagacagaaaagtacagggtcccaccaacaggaagaagaaagtatcaatgtatta 297

                                                                       
Query: 241 ccttatccataaatattgttacttgcttttttttttttacccaattacacttaagtattg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccttatctataaatattgttacttgcttttttttttttacccaattacacttaagtattg 237

                                               
Query: 301 ttatttaactcttccagaagacaatgaccttgtgca 336
           ||||||||||||||||||||| ||||||| ||||||
Sbjct: 236 ttatttaactcttccagaagaaaatgaccctgtgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)